Bacterial members of the Pinus pinaster rhizosphere microbiota in a forest subjected to drought conditions

Global soil microbiomes: A new frontline of biome-ecology research

Soil microbial distribution

Bacerial and archaeal diversity in Central Park

Who eats the tough stuff DNA stable isotope probing (SIP) of bacteria and fungi degrading 13C-labelled lignin and cellulose in forest soils

Compost microbe establishment and growth in agricultural soils

Marine metagenomes Metagenome

16S amplicons New Zealand agricultural soils

uncultured prokaryote Targeted loci environmental

Organic agricultural field soil Raw sequence reads

INSDC Sequences

Response of soil bacteria to anthropogenic soil variables at large spatial scales

INSDC Host Organism Sequences

INSDC Environment Sample Sequences

Temporal variation in pesticide biodegradation

Niche partitioning of methanotrophs in stratified lakes

Microbial community structure is affected by cropping sequences and bio-covers under long-term no-tillage

Microbial diversity in the Benguela coastal upwelling system as derived from 16S rRNA sequencing and RNA Stable Isotope Probing (SIP)

Trace element-contaminated soil Metagenome

Sediment surface microbial community changes due to phytoplankton addition

Mapping and Predictive Variations of Soil Bacterial Richness across French National Territory

Microbial communities associated with Eurasian watermilfoil, water and sediment

marine metagenome Metagenome

Bacterial diversity and community composition in grassland and forest soils of the German Biodiversity Exploratories

DSMZ Prokarya Collection Catalogue

Bacterial diversity in snow from mid-latitude mountain areas: Alps, Eastern Anatolia, Karakoram and Himalaya.

Soil bacterial communities (Hainich National Park)

Non-target effects of Metarhizium brunneum on soil microbial communities

Bacterias y Arqueas de la transición Andino-Amazónica del departamento del Caquetá - Proyecto Colombia BIO

flora & fauna(NIBR)

Varennes Communities in Contaminated Soils

Taxonomic study of endospores in a marine sediment

Bacterial communities from the water column and the surface sediments along a transect in the East Sea (Sea of Japan)

MICROBIS database

Lancang-Mekong microbiome project 16S rRNA metabarcode (March - December 2021)

A practical introduction to microbial molecular ecology through the use of iChips

Soil metagenome from healthy and unhealthy agricultural soil

Prokaryotic microbial communities structure in the headwater watchment of Dongjiang River in the south of China

Raw sequence reads from soil relic DNA study

EGB sediment data (raw sequence reads)

Japan Collection of Microorganisms, RIKEN BioResource Center

MGYS00005313

BCCM/LMG Bacteria collection

Microbial biogeography of 925 geothermal springs in New Zealand

Rifle sediment bacterial community Targeted Locus (Loci)

Impact of sulfamethoxazole on the microbial community of a riverine environment

Coral

Soil microbial diversity in the Maintenance of Exotic vs. Native Diversity experiment (depth study)

Pristine and TNT contaminated (tilled and untilled) soils

Lake Washington sediment enrichments

Shotgun metagenome sequences of Anthelia biocrust samples.

Microbial diversity in benthic stream sediment

Microbial diversity and skin mucosal microbiota in farmed Atlantic salmon with ulcerative disorders, raw sequence reads

marine sediment metagenome Raw sequence reads

FBIP: Diversities of microbiomes from South African arid and natural soils

Shotgun Metagenome Sequencing of Lake Soyang

Abundance, diversity and distribution of Legionellales in wet environments in Sweden

Antarctic Snow Algae 2014/15 16S and 18S Illumina Seq of snow algae communities around Ryder Bay, Antarctica

Marine metagenomes from the bioGEOTRACES project

DSMZ Bacteria

The rhizosphere microbiome of burned holm-oak: potential role of the genus Arthrobacter in the recovery of burned soils

Life in a toxic environment

Po river Prodelta and Mar Piccolo of Taranto surface sediments bacterial communities targeted loci

soil metagenome Raw sequence reads

Soil Microbial communities from weed germination bioassay targeted loci environmental

FBIP: Survey of invertebrate and microbial diversity of the Prince Edward Islands system

NIAES microbial inventory, "microForce" microbe collection, Tsukuba, National Institute for Agro-Environmental Sciences, Japan

Depth profile of ancient sediments

North Pacific Subtropical Gyre Microbial Community

Microbial diversity of marine sediments

Effects of organic matter manipulation on archaeal, bacterial, and fungal community assembly

Bacterial Biomarkers of Marcellus Shale Activity in Pennsylvania

Deep Subsurface Basalts Targeted Locus (Loci)

marine sediment metagenome Metagenome

Sewer sediments Targeted loci environmental

Comparison of marine sediments from the Beguela upwelling zone

Bacterial communities in agricultural soils under contrasting agronomic managements and biomes of Argentina

Spatial and environmental variation in whole microbial communities in Fildes Bay, King George Island, Antarctica Raw sequence reads

Sediment metagenome

seawater metagenome Metagenome

Comparison of copper contaminated soils, with similar uncontaminated controls.

Genetic potential for pentachlorophenol degradation at historically contaminated groundwater sites

International Collection of Microorganisms from Plants (ICMP)

Bacterial biogeography of a High Arctic ice cap

Lake sediment sequencing

Aldegondabreen cryoconite Targeted Locus

Colección de Microorganismos endófitos aislados de plantas de banano (Musa sp)

sediment metagenome Metagenome

Heterotrophic bacterial diversity in aquatic microbial mat communities from Antarctica

Baltic Expression Project

Microbial associations in temperate marine copepods from the Gulf of Maine

Comparative 16S analysis of hydrothermal vent samples from the Mid-Atlantic Ridge (MAR)

Bacteria exposure experiment North Sea

soil bacteria and fungi Targeted loci environmental

It was verified the impact of irrigation treatments (wet, optimal, dry and very dry) and three potato cultivars on soil microbial community.

Centre de Ressources Biologiques de l'Institut Pasteur

Plant niche rather than soil or species shapes the microbiota

Colección de Microorganismos del Grupo de Investigación de Ecología Microbiana y Bioprospección

Bacterial 16s Amplicon Sequencing of the Atlantic Ocean

Tucurui_Metagenoma_MGRAST

Sediment bacterial 16S in Hachiro polder.

Queensland Marine Sediment

Macroalgal Morphology affects composition and settlement of microbial communities

Bacterial 16S rRNA gene sequencing of Antarctic soil

Bacteria Collection in BCRC

Biological Resource Center, Department of Biotechnology, National Institute of Technology and Evaluation

Limited influence of primary treated sewage waters on bacterial abundance, production and community composition in coastal seawaters

permafrost metagenome Targeted loci environmental

Fiocruz/CBAS - Coleção de Bactérias do Ambiente e Saúde

Bacterial 5S Ribosomal RNA RefSeq Targeted Loci Project

Japan Collection of Microorganisms(Bacteria)

16S rRNA genes Random survey

CCA_pathobiome

Bacteria in domestic water-storage containers with or without mosquito larvae

VKM Microbial Cultures from Former USSR

Metabarcoding surveys of the Arctic marine environment

Meta_Kosmos

magnetite Targeted Locus (Loci)

Arctic first-year drift ice and under-ice water bacterial communities

Sea spray aerosols at Three California Beaches

Microbial indicators of anthropogenic marine pollution identified by 16S and 18S metagenomic library analysis

Bacteria in Anopheles darlingi breeding sites in Manaus, the Amazon, Brazil

Bacterial 23S Ribosomal RNA RefSeq Targeted Loci Project

16S rDNA metagenomes of Western Balkans glacial lakes sediments

Ocean sediment-basement interface Targeted Locus (Loci)

Thermophilic endospores in temperate sediments

MeHg Coal Ash

DOW-2

Bacterial 16S Ribosomal RNA RefSeq Targeted Loci Project

marine sediment metagenome Targeted loci environmental

EMOSE (2017) Inter-Comparison of Marine Plankton Metagenome Analysis Methods

Novel Biphenyl Oxidizing Bacteria and Dioxygenase Genes from a Korean Tidal Mudflat

Metagenome from mudbank Area,Alappuzha Kerala India

Species-specific associations between bacterioplankton and photosynthetic picoeukaryotes

Svalbard Targeted Locus (Loci)

marine sediment metagenome Targeted loci environmental

PCB-contaminated sediment Genome sequencing

Bacterial community profiles in a bioreduced uranium contaminated site after reoxidation

Mariana and Kermadec Trench sediment 16S rRNA gene sequencing

eDNA_Subseafloor

DSW-2

Impact of Plant Development on Structure and Function of Rhizosphere Microbial Community associated with Groundnut (Arachis hypogaea L.)

Metagenomic sequence from soil bacteria

iNaturalist Research-grade Observations

Structure and function of picoplankton and virus communities along zonal gradients in the South Pacific Ocean

Marine methane seep Targeted Locus (Loci)

Temperature shifts simulating secondary oil recovery

Cryoconite sediments Targeted Locus (Loci)

Microbial biogeography of French caves

flora&fauna(NIBR)2019

Atlantic salmon microbiota

Assessing the microbial diversity in Cape Comorin ocean water

marine metagenome

This workpackage details only the prokaryote (Archaea and Bacteria) analyses for the MicroPolar project.

marine metagenome Metagenome

Soil microbial response to organic disturbances

Uncultered bacterium Targeted Locus (Loci)

Arctic microbiome along Svalbard Cross Shelf transects

VAG Mine Pit Pond Metagenome

Patagonian fjord prokaryote community

the assembly of abundant and rare bacterioplankton subcommunities in three subtropical bays

Vertical profiles of bacterial community diversity in a drinking water reservoir

Temporal dynamics of the particle-attached and free-living microbial communities from coastal seawater

ATCC Bacteria Collection Catalog

CCUG Microorganisms databases(Bacteria)

IFO Bacteria database

Marine sediment amplicon Targeted loci environmental

Marine Sediment from the Berkeley Bay Targeted Locus (Loci)

Characteristics of bacterial communities in the deep sediment Lake Baikal from the regions with oil and gases discharging

gas hydrate bearing sediment Raw sequence reads

Marine sediment metagenome

Uncultured Environmental Isolate Targeted loci environmental

Microbial Biogeography and Potential Ecological Function Deep Indian Ocean Ridge

Zooplankton microbiome of the Amazon River Plume and western trophic North Atlantic

16S rRNA amplicon sequences of Baltic Sea bacterioplankton

Indian_sediments

Transplant and re-transplant microcosms of Baltic Proper and Bothnian Sea bacterioplankton Targeted Locus (Loci)

Impact of rainforest transformation on phylogenetic and functional diversity of soil prokaryotic communities in Sumatra (Indonesia)

Biodiversidad identificada por medio de metabarcoding asociada al proyecto piloto de investigación integral - PPII Platero, departamento de Santander

Marine plankton Metagenome

Camargue soil and sediment 16S community profiling

Assembly and activity of microbial communities in the Pacific temperate rainforest

Metagenomics Cabo Rojo Salterns

uncultured prokaryote Metagenome

CEFS_16S_ITS

Green alder encroachment shapes microbial diversity in subalpine soils.

Cave sediment Metagenome

Microbial ecology of bacteiral community in sediment from adjacent waters of Rushan Bay

Metagenomics of Jacarepagua Lagoon

Nahant Collection

Amplicon sequencing of Tara Oceans DNA samples corresponding to size fractions for protists.

There are 3 zooplankton samples from 3 different ponds, we collected sample and use the fresh samples to do DNA extraction directly, then mix them with adjustment guided by the number of species within each of them. At last, use Hiseq-2599 PE-150 to do NGS work

CARBOM cruise 2013 flow cytometry sorted phytoplankton

Baltic Sea high-frequency temporal study 2012 at the Linnaeus Microbial Observatory Targeted Locus (Loci)

Variation in freshwater stream sediment community 16S rRNA profiles along an urbanization gradient

Shotgun metagenomic analysis of Lake Paajarvi sediment microbes.

Bacterial community of river sediment enriched with polycyclic aromatic hydrocarbons

dsrB sequencing of sulfate-reducing microbial communities in Skagerrak and Baltic sediment