Geotraces Raw sequence reads
Citation
MGnify (2020). Geotraces Raw sequence reads. Sampling event dataset https://doi.org/10.15468/8ncxpr accessed via GBIF.org on 2024-08-31.Description
This study is aimed to explore the microbial lifestyle in ocean and interpret metabolic potentials using metagenome/metaproteome dataset. Furthermore, it is important to learn about various mode of energy consumption that may support marine microbes i.e. photoautotrophy, chemoautotrophy and heterotrophy.Sampling Description
Sampling
This study is aimed to explore the microbial lifestyle in ocean and interpret metabolic potentials using metagenome/metaproteome dataset. Furthermore, it is important to learn about various mode of energy consumption that may support marine microbes i.e. photoautotrophy, chemoautotrophy and heterotrophy.Method steps
- Pipeline used: https://www.ebi.ac.uk/metagenomics/pipelines/4.1
Taxonomic Coverages
Geographic Coverages
Bibliographic Citations
- Bergauer K, Fernandez-Guerra A, Garcia JAL, Sprenger RR, Stepanauskas R, Pachiadaki MG, Jensen ON, Herndl GJ. 2018. Organic matter processing by microbial communities throughout the Atlantic water column as revealed by metaproteomics. Proc Natl Acad Sci U S A vol. 115 - DOI:10.1073/pnas.1708779115
Contacts
originatorUniversity of Vienna
metadata author
University of Vienna
administrative point of contact
University of Vienna