Occurrence of Eukaryotes in the size fraction >300 micrometres, collected worldwide during the Tara Oceans expedition (2009-2013) using a Bongo net and analysed on a ZooScan imaging platform
Citation
Romagnan, J.B., Jalabert, L., Llopiz Monferrer, N., Elineau, A., Dimier, C., Picheral, M., Searson, S., Kandels-Lewis, S., Tara Oceans Consortium Coordinators, Karsenti, E., Pesant, S., Irisson, J.O., Lombard, F., Stemmann, L., Gorsky, G.; (2020) Occurrence of Eukaryotes in the size fraction >300 micrometres, collected worldwide during the Tara Oceans expedition (2009-2013) using a Bongo net and analysed on a ZooScan imaging platform https://dx.doi.org/10.14284/518 accessed via GBIF.org on 2024-11-03.Description
Tara expeditions sampled the world’s oceans with standardized protocols, putting an exceptional effort into sampling plankton diversity across a large size range, using a combination of water samples and net tows. The efforts to explore the genomic diversity of plankton, through metabarcoding and metagenomics, have led to well publicized papers and have made the renown of Tara. While a similar extensive effort has been put on imaging, the datasets are not public yet. In a limited number of stations, in addition to the usual 5μm -> ~5cm Tara sampling strategy, Bongo net samples were taken during the day and during the night, at the same station; this is the content of this dataset. Using a 300µm mesh net, it cover organisms from 300µm to ~3cmAdditional info
Bongo net (300μm mesh) hauled vertically from 500m depth to the surface, once during the day, and once during the night. Sample preserved in 4% buffered formalin and stored over the long term at the Centre de Collections Planctoniques de Villefranche (CCPv). Sample scanned on a ZooScan, images processed with ZooProcess and sorted taxonomically on EcoTaxa, within the Plateforme d'Imagerie Quantitative de Villefranche (PIQv). The PIQv and CCPv platforms are part of EMBRC-France, a national Research Infrastructure supported by ANR, under the reference ANR-10-INSB-02.Taxonomic Coverages
urn:lsid:marinespecies.org:taxname:104074
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Acartiidaerank: family
urn:lsid:marinespecies.org:taxname:882
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Annelidarank: phylum
urn:lsid:marinespecies.org:taxname:104077
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Augaptilidaerank: family
urn:lsid:marinespecies.org:taxname:104079
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Calanidaerank: family
urn:lsid:marinespecies.org:taxname:1100
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Calanoidarank: order
urn:lsid:marinespecies.org:taxname:104669
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Calocalanus pavo (Dana, 1849)rank: species
urn:lsid:marinespecies.org:taxname:104080
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Candaciidaerank: family
urn:lsid:marinespecies.org:taxname:104081
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Centropagidaerank: family
urn:lsid:marinespecies.org:taxname:1080
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Copepodarank: class
urn:lsid:marinespecies.org:taxname:104085
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Eucalanidaerank: family
urn:lsid:marinespecies.org:taxname:104086
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Euchaetidaerank: family
urn:lsid:marinespecies.org:taxname:1086
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Eumalacostracarank: subclass
urn:lsid:marinespecies.org:taxname:1128
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Euphausiacearank: order
urn:lsid:marinespecies.org:taxname:106267
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Evadne Lovén, 1836rank: genus
urn:lsid:marinespecies.org:taxname:1410
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Foraminiferarank: phylum
urn:lsid:marinespecies.org:taxname:104087
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Heterorhabdidaerank: family
urn:lsid:marinespecies.org:taxname:1205
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Hyperiidearank: suborder
urn:lsid:marinespecies.org:taxname:106422
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Oithonidaerank: family
urn:lsid:marinespecies.org:taxname:106266
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Peniliarank: genus
urn:lsid:marinespecies.org:taxname:345868
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Phaeodariarank: subclass
urn:lsid:marinespecies.org:taxname:109444
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Pyrocystaceaerank: family
urn:lsid:marinespecies.org:taxname:582420
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Rhizariarank: infrakingdom
urn:lsid:marinespecies.org:taxname:104106
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Temoridaerank: family
urn:lsid:marinespecies.org:taxname:958
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Tomopteridaerank: family
Geographic Coverages
EurOBIS calculated BBOX > station Bounding Box
World Oceans
Bibliographic Citations
Contacts
Jean-Baptiste Romagnanoriginator
Sorbonne Université
Laetitia Jalabert
originator
Sorbonne Université
Laetitia Jalabert
originator
Sorbonne Université; Sorbonne Université/CNRS, Institut de la Mer de Villefranche
Natalia Llopis Monferrer
originator
Sorbonne Université
Natalia Llopis Monferrer
originator
Sorbonne Université; Sorbonne Université/CNRS, Laboratoire d'Océanographie de Villefranche
Amanda Elineau
originator
Sorbonne Université
Amanda Elineau
originator
Sorbonne Université; Sorbonne Université/CNRS, Institut de la Mer de Villefranche
Céline Dimier
originator
Sorbonne Université
Céline Dimier
originator
Sorbonne Université; Sorbonne Université/CNRS, Station Biologique de Roscoff
Marc Picheral
originator
Sorbonne Université
Sarah Searson
originator
Sorbonne Université
Stefanie Kandels-Lewis
originator
European Molecular Biology Laboratory
Stéphane Pesant
originator
University of Bremen; Centre for Marine Environmental Sciences
DE
email: thor@marum.de
userId: https://orcid.org/0000-0002-4936-5209
Jean-Olivier Irisson
originator
Sorbonne Université
Fabien Lombard
originator
Sorbonne Université
Lars Stemmann
originator
Sorbonne Université
Gabriel Gorsky
originator
Sorbonne Université
Erik Karsenti
originator
European Molecular Biology Laboratory
Tara Oceans Consortium Coordinators
originator
Tara Oceans Consortium
Jean-Olivier Irisson
metadata author
Sorbonne Université; Sorbonne Université/CNRS, Laboratoire d'Océanographie de Villefranche
Fabien Lombard
administrative point of contact
Sorbonne Université; Sorbonne Université/CNRS, Laboratoire d'Océanographie de Villefranche