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GBIF.org (28 January 2022) GBIF Occurrence Download https://doi.org/10.15468/dl.gag3td
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Alistipes Rautio et al., 2003
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680Marine metagenomes Metagenome
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371Nahant Collection
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267Coral
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158EMOSE (2017) Inter-Comparison of Marine Plankton Metagenome Analysis Methods
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152Bacerial and archaeal diversity in Central Park
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152MGYS00005313
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119Soil marker gene sequences across the Nutrient Network
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99Bacterias y Arqueas de la transición Andino-Amazónica del departamento del Caquetá - Proyecto Colombia BIO
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93Microbial biogeography of 925 geothermal springs in New Zealand
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92marine metagenome Metagenome
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8816S amplicons New Zealand agricultural soils
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75Response of soil bacteria to anthropogenic soil variables at large spatial scales
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67Macroalgal Morphology affects composition and settlement of microbial communities
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61MICROBIS database
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59IMPACT OF SAHARAN DUST DEPOSITION ON BACTERIOPLANKTON IN MARINE SURFACE WATER
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59uncultured prokaryote Targeted loci environmental
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53Lake sediment sequencing
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52DEEPEND: Microbiome and bacterioplankton rRNA gene sequence data collected from Gulf of Mexico seawater samples. Cruises DP03 and DP04 from Jan 2016 - December 2016
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52Microbial communities associated with Eurasian watermilfoil, water and sediment
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42Composition and Genetic Diversity of Microbial Communities in Subtropical Coastal Wetland Sediments
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40Marine metagenome Targeted loci environmental
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36Temporal variation in pesticide biodegradation
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32Microbial community structure is affected by cropping sequences and bio-covers under long-term no-tillage
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30North Pacific Subtropical Gyre Microbial Community
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30Bacteria exposure experiment North Sea
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29Bacterial 16s Amplicon Sequencing of the Atlantic Ocean
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29Herbicide-incubated GBR lagoon microbiomes Targeted loci environmental
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29INSDC Host Organism Sequences
-
28Temporal effect of plant diversity and oiling on nitrogen cycling in marsh sediments
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27Limited influence of primary treated sewage waters on bacterial abundance, production and community composition in coastal seawaters
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27Seasonal and spatial diversity of bacterial communities in marine sediments of Ningbo Xiangshan Coastal Ocean
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26Microbial Biogeography and Potential Ecological Function Deep Indian Ocean Ridge
-
26Bacterial communities from the water column and the surface sediments along a transect in the East Sea (Sea of Japan)
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24Organic agricultural field soil Raw sequence reads
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22Microbial diversity in the Benguela coastal upwelling system as derived from 16S rRNA sequencing and RNA Stable Isotope Probing (SIP)
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22Marine metagenomes from the bioGEOTRACES project
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22the assembly of abundant and rare bacterioplankton subcommunities in three subtropical bays
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22Exploring Fronts With Multiple Robots Schmidt Ocean Institute Cruise to the Pacific Ocean in 2018
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21Oceanic microplankton do not adhere to the latitudinal diversity gradient
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20Prokaryotic microbial communities structure in the headwater watchment of Dongjiang River in the south of China
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20Archaea
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20North Sea plastic incubation and reference communities, raw sequence reads
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19Effects of triclosan on bacterial community composition in natural seawater microcosms
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19estuary metagenome Raw sequence reads
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18Bacterial 16S Ribosomal RNA RefSeq Targeted Loci Project
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18Bacterial 16S rRNA gene sequencing of Antarctic soil
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18Life in a toxic environment
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16Soil microbial diversity in the Maintenance of Exotic vs. Native Diversity experiment (depth study)
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16Metabarcoding surveys of the Arctic marine environment
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16Coastal seawater influenced by the municipal effluents Raw sequence reads
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15MeHg Coal Ash
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15Queensland Marine Sediment
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15Marine methane seep Targeted Locus (Loci)
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15US East Coast Salt Marshes Targeted Locus (Loci)
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15Indian_sediments
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15Effects of organic matter manipulation on archaeal, bacterial, and fungal community assembly
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1516S rDNA sequencing
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15Variations in prokaryotic community assembly and predicted metabolic potential of surface sediments with geography in the coastal northern Zhejiang, East China Sea
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14Sewer sediments Targeted loci environmental
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14Coral-associated bacteria demonstrate phylosymbiosis and cophylogeny
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13Bacterial Biogeography of Coastal Water in the Northern East China Sea
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13Soil bacterial diversity is associated with human population density in urban greenspaces
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13Who eats the tough stuff DNA stable isotope probing (SIP) of bacteria and fungi degrading 13C-labelled lignin and cellulose in forest soils
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13Taxonomic study of endospores in a marine sediment
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13Impact of a major inflow event on the composition and distribution of bacterioplankton communities in the Baltic Sea
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13Bacterial community structure and their predicted functions in coastal sediments
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13Sea spray aerosols at Three California Beaches
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13Narragansett Bay, RI Sediments Targeted Locus (Loci)
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12Chandeleur Island 2016 Amplicon Study Raw sequence reads
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12This workpackage details only the prokaryote (Archaea and Bacteria) analyses for the MicroPolar project.
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11Effect of size fractionation and DNA extraction on the diversity and composition of prokaryotic and eukaryotic plankton community
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11Bacterial communitiy compositions on natural and artificial substrates in the Spermonde Archipelago, Indonesia
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11Microbial diversity in benthic stream sediment
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11Microbial Diversity in the Southwest Atlantic Ocean and Patagonian Freshwater Bodies
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11sediment microorganisms nirK gene Raw sequence reads
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11Abundance, diversity and distribution of Legionellales in wet environments in Sweden
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11Meta_Kosmos
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11Microbial community response on waste water discharge in recipient freshwater sediments
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11Nuunat- ORMS formation during oil biodegradation at low temperature
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11Bacterial Biomarkers of Marcellus Shale Activity in Pennsylvania
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10soil metagenome Raw sequence reads
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10Seawater metagenome Targeted loci environmental
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10Microbial diversity of marine sediments
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10PREsediment Targeted Locus (Loci)
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9Marine bacteria Targeted Locus (Loci)
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9Groundwater microbiome
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9Sediment surface microbial community changes due to phytoplankton addition
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9marine metagenome Metagenome
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9DSMZ Prokarya Collection Catalogue
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9Pond sediments Metagenome
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9Microbial communities in the phycosphere environment
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8Marine sediment microbial communities in the presence of macrophytes
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8Rifle sediment bacterial community Targeted Locus (Loci)
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816S Amplicon Data from an Antarctic Cold Seep
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8Cryoconite sediments Targeted Locus (Loci)
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8seawater bacterial community Raw sequence reads
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8AllDist Targeted Locus (Loci)
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8Little Sippewissett Marsh Targeted Locus (Loci)
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8marine sediment metagenome Targeted loci environmental
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7Antimony contaminated sediments Raw sequence reads
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7marine sediment metagenome Raw sequence reads
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7SCHEMA_Sediment
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7A practical introduction to microbial molecular ecology through the use of iChips
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7CCA_pathobiome
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7Microbial ecology of archaeal community in sediment from adjacent waters of Rushan Bay
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7Microbial communities in marine surface water
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7the under-explored coal gangue and the adjacent acid mine drainage creek soil Raw sequence reads
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7Diversity of bacterioneuston and bacterioplankton in coastal waters of Misaki, Japan
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7Arctic first-year drift ice and under-ice water bacterial communities
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7Tyne oil spill snorkels Raw sequence reads
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7particle-attached and free-living bacteria kongsfjorden
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6Bacterial diversity and community composition in grassland and forest soils of the German Biodiversity Exploratories
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6Po river Prodelta and Mar Piccolo of Taranto surface sediments bacterial communities targeted loci
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6PCB-contaminated sediment Genome sequencing
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6Microbiome profiling Schlöppnerbrunnen peat cores from different depths
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6Baselines Initiative 16S rRNA gene dataset: Baselines Amplicon Release 1 (R1) Caribbean Sea near Curacao (including saline pond samples in Curacao) 2015
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6Microbial diversity in the Tongyeong-Geoje coastal area of Korea2
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6Temporal sampling of marine metagenomes from Station ALOHA and BATS
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6Saltern microbial community diversity
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6photoautotrophic_biofilm
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6Bacterial diversity in snow from mid-latitude mountain areas: Alps, Eastern Anatolia, Karakoram and Himalaya.
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6Raw sequence reads from soil relic DNA study
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6Patagonian fjord prokaryote community
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6DSMZ Bacteria
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616S sequencing of environmental samples to test the impact of sediment source
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6Microbial Processes and Biodiversity: OCEAN
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6nirS-Encoding and nirK-Encoding Denitrifiers in the Sediment of Daya Bay Raw sequence reads
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6Seawater Targeted Locus (Loci)
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6bacterial community in the deep-sea surface sediments
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5Saltern of Margherita di Savoia Metagenome
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5Pelagic Gulf of Mexico Targeted loci environmental
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5Bacterial community profiles in a bioreduced uranium contaminated site after reoxidation
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5INSDC Environment Sample Sequences
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5Impacts of crude oil and chemical dispersant exposure on marine microbial biofilm formation and steel corrosion
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5Ice Wedge Polygon
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5Eastern offshore environmental monitoring of Krishna Godavari Basin Bay of Bengal 2013-2016, Funded by: ONGC India
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5Japan Collection of Microorganisms, RIKEN BioResource Center
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5Coral or reef-seawater associated bacteria Targeted Locus (Loci)
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5Marine Sediment from the Berkeley Bay Targeted Locus (Loci)
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5Soil bacterial communities (Hainich National Park)
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5Mediterranean Contaminated Pelagic communities
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5Impact of rainforest transformation on phylogenetic and functional diversity of soil prokaryotic communities in Sumatra (Indonesia)
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5Archaea 16S 01-13 Genome sequencing and assembly
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5Gulf Oil Spill underwater oil plume samples Targeted Locus (Loci)
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5microbial community diversities of Tuosu Lake
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5seawater metagenome
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5Antarctic Snow Algae 2014/15 16S and 18S Illumina Seq of snow algae communities around Ryder Bay, Antarctica
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5Microbial indicators of anthropogenic marine pollution identified by 16S and 18S metagenomic library analysis
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5Sediment Metagenome Raw sequence reads
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516s data marine community of L4 station
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5Niche partitioning of methanotrophs in stratified lakes
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4MiSeq 16S rRNA gene (prokaryotic 16S rRNA gene) sequences of 33 Mai Po sediments, including 18 samples from winter and 15 samples from summer
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4Gulf of Mexico open ocean Targeted Locus (Loci)
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4water sample Raw sequence reads
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4Zostera Marina Ammonification environmental
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4marine sediment metagenome Targeted loci environmental
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4Prospecting of extreme microbial ecosystems associated to minerals (microbialites, microbial mats and endoevaporites) in Puna, Wetlands and Salars of Argentina, Chile and Bolivia
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4Santa Barbara Basin Raw sequence reads
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4XRM sediment metagenome Metagenome
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4ZRD sediment metagenome Metagenome
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4Effects of different types of wastewater on microbial degradation of 2,2'',4,4''-tetrabromodiphenyl ether (BDE-47) in anaerobic sediment.
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4Santa Monica Basin seep sediment incubations to assess C and N sources for F430 synthesis
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4Benham Rise 16S raw sequence reads
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4XRU sediment metagenome Metagenome
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4Assessing the effects of salmon farming seabed enrichment using bacterial community diversity and high throughput sequencing
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4ZRCWD sediment metagenome Metagenome
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4ZRU sediment metagenome Metagenome
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4CEFS_16S_ITS
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4INSDC Sequences
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4aquatic bacterial metagenome Raw sequence reads
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4XRCWU sediment metagenome Metagenome
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4Distributions and Abundances of Sublineages of the N2-Fixing Cyanobacterium Candidatus Atelocyanobacterium thalassa (UCYN-A) in the Noumea Lagoon
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4ZRM sediment metagenome Metagenome
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4Biological rejuvenation of iron oxides in bioturbated marine sediments
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4Equatorial Pacific Ocean Targeted loci environmental
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3Bacteria of the genus Endozoicomonas dominate the microbial communities of the Mediterranean gorgonian soft coral Eunicella cavolini
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3Diversity of SE Pacific benthic Bacteria and Archaea communities Targeted Locus (Loci)
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3Effects of Fecal Input, Environmental Conditions, and Environmental Sources on Enterococci Concentrations in an Estuarine Ecosystem
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3Species-specific associations between bacterioplankton and photosynthetic picoeukaryotes
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3Microbial communities in the ocean Raw sequence reads
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3Coastal Sediment Bacterial Community Alterations in Association with Sudden Vegetation Dieback
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3Guaymas Basin and Sonora Margin sediment Targeted loci
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3Red Sea microbial plankton Raw sequence reads
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3XRCWD sediment metagenome Metagenome
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3Freshwater sediment Raw sequence reads
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316S rRNA genes Random survey
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3Natural seawater bacterial community in exopolysaccharides utilization
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3California Current System Long Term Ecological Research P1604 (CCS_LTER_P1604) Targeted loci environmental
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3Marine sediment metagenome
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3Lake Washington sediment enrichments
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3Peruvian eddy shotgun metagenomes
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3Bermuda Atlantic Time-series Study metagenomes
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3Comparative 16S analysis of hydrothermal vent samples from the Mid-Atlantic Ridge (MAR)
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3Soil microbial distribution
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2DDCA-metagenome
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2Newfoundland sediment pyrosequencing
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2marine sediment metagenome Metagenome
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2Compost microbe establishment and growth in agricultural soils
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2Surface sediment of Yellow Sea, Bohai Sea and north East China Sea Metagenome
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2Microbial community structure and dynamics in the oxygen minimum zone of the Northeast subarctic Pacific Ocean
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2Raw sequence reads
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2Marine sponges and seawater Targeted Locus (Loci)
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2Biogeography of coastal wetland bacterial communities experiencing sudden vegetation dieoff
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2estuary metagenome Raw sequence reads
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2marine metagenome
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2Soil microbial response to organic disturbances
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2marine sediment metagenome Raw sequence reads
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216S rRNA amplicon from marine Bacteria Raw sequence reads
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2Incubation of marine methane seep sediments with a bioorthogonal amino acid
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2sediment metagenome Metagenome
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2Bacterial 5S Ribosomal RNA RefSeq Targeted Loci Project
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2Methane and dissolved organic carbon fueled microbial loop supports a tropical subterranean estuary ecosystem
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216S rDNA amplicon of Bacteria and Archaea Metagenome
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2South China Normal University mangrove sediment Targeted Locus (Loci)
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2anchialine metagenome Raw sequence reads
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2Sediment river Genome sequencing and assembly
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2microbial diversity Raw sequence reads
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2Marine plankton Metagenome
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2Camargue soil and sediment 16S community profiling
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2Pelagic sediment metagenome of Gulf of Kutch
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2Studies of marine microbial dark matter
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2marine sediment metagenome Raw sequence reads
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2Mediterranean mud volcano flow Targeted loci
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2PAH-contaminated sediment from the Lagos Lagoon, Nigeria
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2Taxonomic composition of microbial communities in coastal Arctic sediments
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2VKM Microbial Cultures from Former USSR
-
2sea water bacteria Raw sequence reads
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2A long-standing complex tropical dipole shapes marine microbial biogeography
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216S data describing Antarctic benthic sediment
-
2Microbial ecology of bacteiral community in sediment from adjacent waters of Rushan Bay
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2Sundarbans estuarine ecosystem Metagenome
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2Development and validation of a multi-trophic metabarcoding biotic index for benthic organic enrichment biomonitoring using a salmon farm case-study.
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2Biological Impacts of Ocean Acidification
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2Caspian Sea Sediment - 16S Survey Targeted Locus (Loci)
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2Centre de Ressources Biologiques de l'Institut Pasteur
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2Appliaction of metagenomic technique for isolation of microbes from mangroves for potential use in biofertilization and bioremediation
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2Coral Spawn Degradation, Bocas del Toro, Panama - Raw sequence reads
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2Bacterial 23S Ribosomal RNA RefSeq Targeted Loci Project
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216S rRNA Analysis of Osaka Bay Microbiomes
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1Thermophilic endospores in temperate sediments
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1DOW-2
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1Tucurui_Metagenoma_MGRAST
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1A comparison of microbial community composition in four contrasting sediments in the Celtic Sea
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1Bacterial 16S rRNA and fungal ITS Metagenome
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1Marine metagenome ICM_AWP
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1Abalone seed nursing ecosystem Metagenome
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1Enrichment of organohalide respiring bacteria
-
1The effect of salinity in prokaryotic communities in an estuary
-
1marine sediment metagenome Metagenomic assembly
-
116S marine bacteria Raw sequence reads MEDEA2
-
1ocean bacteria Metagenomic assembly
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1Socompa Lake Stromatolite Shotgun Metagenomic Sequencing
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1Amplicon sequencing of gyrA and parC in Escherichia communities in river/lake sediments
-
1Microbial diversity in the Tongyeong-Geoje coastal area of Korea
-
1MiSeq 16S rRNA gene (prokaryotic 16S rRNA gene) sequences of 16 SCS sediments
-
1Microbial diversity in the Tongyeong-Geoje coastal area of Korea
-
1Pelagic Microbiome: viruses to protists. 16S and 18S data from oceanic samples collected at the chlorophyll maximum.
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1Loihi Seamount Targeted loci environmental
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1Metagenome from mudbank Area,Alappuzha Kerala India
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1Geotraces Raw sequence reads
-
1Microbial community in PAH-contaminated riverine sediments
-
1microbial communities in long-term e-waste contaminated river sediments
-
1Illumina high-throughput sequencing of bacterial community
-
1Planktonic bacterial communities in the arctic Canada Basin and Kongsfjorden
-
1sediment metagenome Raw sequence reads
-
1Microbial diversity of Oslo Fjord Pockmark sediments
-
1Mariana and Kermadec Trench sediment 16S rRNA gene sequencing
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13Soil16S
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1Pyrosequencing, the South Sea, May 2009
-
1Ocean Acidification baceria sample Targeted loci environmental
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1Bacterial communities from Thrombolites of Lake Sarmiento
-
1E1 Targeted Locus (Loci)
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1Marine subseafloor sediment Targeted Locus (Loci)
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1Bacteria Collection in BCRC
-
1Pyrosequencing reveals highly diverse and species-specific microbial communities in sponges from the Red Sea
-
1Microbial communities associated with Juncus roemerianus and Spartina alterniflora vegetated sediments in Louisiana saltmarshes
-
1Temperature shifts simulating secondary oil recovery
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1Core MV1012-46.9-JPC2 aDNA metagenomes and negative control
-
1Atlantic salmon microbiota
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1Assessing the microbial diversity in Cape Comorin ocean water
-
1SOLA Raw sequence reads
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1Global phylogeography survey of thermophilic spores in marine sediments.
-
1Bacterial Diversity in the East China Sea
-
1Microbiome variation in Agaricia undata with distinct depth distribution ranges
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1Arctic Ocean
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1Nanticoke Harbour, ON, Canada (plankton SSU 454 sequencing)
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1sediment metagenome Metagenome
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1Oil-water intephase microbial community analysis Raw sequence reads
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1marine metagenome Raw sequence reads
-
1microbial community composition of marine water and sediment
-
1Plankton sample collected from Nanaimo Harbour Targeted Locus (Loci)
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1Arctic microbiome along Svalbard Cross Shelf transects
-
1Methanogens and iron-reducing bacteria are major contributors to mercury methylation in boreal lake sediments
-
1Diversity and population structure of Marine Group A in the oxygen minimum zone of the Northeast subarctic Pacific Ocean
-
1Distinctive Microbial Community Structure in Highly Stratified Deep-Sea Brine Water Columns
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1DOS-1
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1Fe3+ and Mn4+ - induced changes in microbial communities of boreal lake sediments
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1ATCC Bacteria Collection Catalog
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1Marine sediment amplicon Targeted loci environmental
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1marine metagenome Raw sequence reads
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1marine sediment metagenome Raw sequence reads
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1Microbial diversity and skin mucosal microbiota in farmed Atlantic salmon with ulcerative disorders, raw sequence reads
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1Sediment Metagenome
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1Characteristics of bacterial communities in the deep sediment Lake Baikal from the regions with oil and gases discharging
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1gas hydrate bearing sediment Raw sequence reads
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1Uncultured Environmental Isolate Targeted loci environmental
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1Eukaryote diversity assessment of sediments of the Western English Channel
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1Bayside Harbour, NS, Canada (plankton SSU library 454 sequencing)
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1Fluctuating redox regimes raw sequence reads
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1Prokaryotic community structure in the deep Southwest Indian Ocean with an emphasis on actinobacteria Targeted Locus (Loci)
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1Aarhus Bay Station M5 sediment metagenome sequencing
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1Marine sediment Raw sequence reads
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1marine sediment Raw sequence reads
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1Marine bacteria metagenome
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1Time course change of microbial community in tsunami sediment caused by the Great East Japan Earthquake
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1Microbial associations in temperate marine copepods from the Gulf of Maine
-
1Prince Edward Island marine metgenome Raw sequence reads
-
1Diversities of bacteria and archaea in Sanya mangrove sediments
-
1May 2013 DNA-SIP marine seawater bacteria metagenomic assembly
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1Evaluation of filtration and DNA extraction methods for environmental DNA biodiversity assessments across multiple trophic levels.
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1Microbial diversity in four Mediterranean irciniid sponges
-
1CTD water column metabarcoding
-
1Picocyanobacterial diversity in spring in the East China Sea and the East Sea (Targeted loci environmental)
-
1Polymetallic nodule field Targeted loci environmental
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1Simulated crude oil seepage Caspian Sea Raw sequence reads
-
1Short-term interaction of pyrene and cadmium in prokaryotic community in coastal sediment microcosms
-
1Sediment microbial community Random survey
-
1magnetite Targeted Locus (Loci)
-
1Benthic Ocean Acidification
-
1environmental sample sequencing
-
1Metagenomics of Jacarepagua Lagoon
-
1Baltic Sea high-frequency temporal study 2012 at the Linnaeus Microbial Observatory Targeted Locus (Loci)
-
1sediment metagenome Raw sequence reads
-
11)sediments; 2) coral floc Metagenome
-
1soil bacteria and fungi Targeted loci environmental
-
1Variation in freshwater stream sediment community 16S rRNA profiles along an urbanization gradient
-
1Bacteria community in the southern East China Sea
-
1mangrove rhizosphere sediment Metagenome Raw sequence reads
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1It was verified the impact of irrigation treatments (wet, optimal, dry and very dry) and three potato cultivars on soil microbial community.
-
1Vertical stratification of microbial communities in the Red Sea revealed by 16S rDNA pyrosequencing
-
1marine sediment metagenome Raw sequence reads
-
1NEON Surface Water Microbe Marker Gene Sequences - 2014
-
1Pelagic sediment metagenome of Gulf of Khambhat
-
1Standard filtration practices significantly distort planktonic microbial diversity estimates
-
1Microbial diversity
-
1UK coast natural seawater Genome sequencing
-
1Enrichment metagenome
-
1Plant niche rather than soil or species shapes the microbiota
-
1Bacterial community diverisity