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GBIF.org (21 November 2020) GBIF Occurrence Download https://doi.org/10.15468/dl.6sczp7
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Download as TSV
-
25kContinuous Plankton Recorder Dataset (SAHFOS)
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10kMarine metagenomes Metagenome
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3kJODC Dataset
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1kAmplicon sequencing of Tara Oceans DNA samples corresponding to size fractions for protists.
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1kNahant Collection
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1kEMOSE (2017) Inter-Comparison of Marine Plankton Metagenome Analysis Methods
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524Dutch Foundation for Applied Water Research (STOWA) - Limnodata Neerlandica
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426SOLA Raw sequence reads
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357Marine Water Column Samples Targeted loci environmental
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314Development and validation of a multi-trophic metabarcoding biotic index for benthic organic enrichment biomonitoring using a salmon farm case-study.
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283The Australian Phytoplankton Database (1844 onwards)
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277Red Sea microbial plankton Raw sequence reads
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252Archives of the Arctic Seas Zooplankton
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214Biota occurrence data from plankton surveys around New Zealand
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180California Current Cruise CCE-P1408 Process Cruise #6
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176IMOS - AusCPR: Phytoplankton Abundance
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163Protist Diversity in the East China Sea
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129Marine metagenomes from the bioGEOTRACES project
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118Nutrient addition mesocosm experiment Targeted Locus (Loci)
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113SAR amplicon from community incubated with various nanophytoplankton in microcosm
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106Zooplankton communities in the coastal water of northeastern Hokkaido
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101INVESTIGATING THE MICROBIAL EUKARYOTIC COMMUNITIES IN THE SURFACE WATERS OF THE ARAFURA SEA AND CORAL SEA
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89Protists community in the southern East China Sea
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88CARBOM cruise 2013 flow cytometry sorted phytoplankton
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85IMOS Plankton Collection - AusCPR: Zooplankton Abundance
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85Ice core meiofauna during the SIPEX and SIPEX II voyages
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84Effect of size fractionation and DNA extraction on the diversity and composition of prokaryotic and eukaryotic plankton community
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83Microbial Processes and Biodiversity: OCEAN
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82Pelagic Microbiome: viruses to protists. 16S and 18S data from oceanic samples collected at the chlorophyll maximum.
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80Uncultured eukaryotes Targeted Locus (Loci)
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78Microbial communities in the ocean Raw sequence reads
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76IMOS National Reference Stations (NRS) Phytoplankton Abundance and Biovolume
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76Eukaryotic natural population from Northern Baffin Bay - Raw sequence reads
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74IMOS National Reference Station (NRS) - Zooplankton Abundance
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65Surface ocean Targeted Locus (Loci)
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62Biological rejuvenation of iron oxides in bioturbated marine sediments
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60Southern Ocean microorganisms Targeted Locus (Loci)
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58Water and Sediment samples Targeted loci environmental
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57Amplicon sequencing of Tara Oceans RNA samples corresponding to size fractions for protists.
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57Marine planktonic ciliates: SSU rDNA
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56Amundsen Gulf Overwintering Eukaryote Community
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56Microbial eukaryotes
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56bioman_belgium
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54Exploring Fronts With Multiple Robots Schmidt Ocean Institute Cruise to the Pacific Ocean in 2018
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53Temporal variation in pesticide biodegradation
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53Biodiverskripsi: Biodiversity Theses Database
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52Temporal dynamics of eukaryotic microbial diversity at a coastal Pacific site
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51Temporal sampling of marine metagenomes from Station ALOHA and BATS
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51Extracellular DNA marine sediment Targeted Locus (Loci)
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49Arctic microbiome along Svalbard Cross Shelf transects
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49Red Sea Zooplankton Raw sequence reads
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47Hatteras return: Oligotrich and choreotrich ciliates diversity at small scales
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46Norwegian Biodiversity Information Centre - Other datasets
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45White sea picoplankton Metagenome
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44Sea ice and seawater Raw sequence reads
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41Eucaryotic microbial communities structure in the headwater watchment of Dongjiang River in the south of China
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41Microbial communities in the phycosphere environment
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40Sediment Metagenome Raw sequence reads
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35sea water Picoeukaryotic Community Raw sequence reads Raw sequence reads
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33sediment metagenome Raw sequence reads
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32Electron Micrograph Database - Marine Specimens
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32Magdalen Island Spatio Temporal (MIST) Raw sequence reads
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30Hydrate Ridge, OR - Deep sea cold seep ecosystem Targeted Locus (Loci)
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30flora & fauna(NIBR)
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28Diet analysis of Japanese sardine and Pacific round herring larvae
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28marine metagenome Raw sequence reads
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28Metabarcoding surveys of the Arctic marine environment
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26Protists in Havre-aux-Maisons Lagoon, Magdalen Islands, Quebec, Canada
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25Natural History Museum (London) Collection Specimens
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24ARMS Jeddah sample Raw sequence reads
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24Antarctic Marine Protists species checklist
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23uncultured marine picoeukaryote strain:Peuk_V4_NWP1 Raw sequence reads
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22Diet analysis of Pacific Bluefin Tuna larvae
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21North Sea plastic incubation and reference communities, raw sequence reads
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20Marine sediment metagenome raw sequence reads
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20A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes
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19Accuracy of protist diversity assessments: morphology compared to cloning and direct pyrosequencing of 18S rRNA genes and ITS regions using the conspicuous tintinnid ciliates as a case study
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19Marine metagenome ICM_JRV
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18sediment metagenome Metagenome
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17uncultured marine picoeukaryote strain:Peuk_V4_NWP2 Raw sequence reads
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17The Indigo Project: a global citizen science Ocean survey
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17Microbial indicators of anthropogenic marine pollution identified by 16S and 18S metagenomic library analysis
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17Eukaryotic protists Metagenome
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16blocking PCR amplification of metazoan DNA for protistan diversity
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15Spirulina necromass degradartion in arctic marine sediments
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15Eukaryotic diversity in Central Park
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15Plant niche rather than soil or species shapes the microbiota
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14The Nanoeukaryotic plankton Raw sequence reads
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14Microbial eukaryote Metagenome
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14Marine eukaryotes Targeted loci environmental
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13marine sediment metagenome Metagenome
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13Metagenomic community analysis of marine zooplankton using two plankton nets
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13Marine microbial eukaryote community analysis in Korea
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12Fungal diversity in Sanya mangrove sediments, China
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12Amplicon-Based Illumina Sequencing Reveals High Diversity of Phytoplankton in the Coastal Waters of Qinhuangdao
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12Microbial communities in estuarine sediments
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11Global phylogeography survey of thermophilic spores in marine sediments.
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11(Table 2.2.1.1) Abundance of sympagic meiofauna of sea-ice core IO-10
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11Magadalen Islands Spatio Temporal (MIST) Large Fraction
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11Bermuda Atlantic Time-series Study metagenomes
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11Environmental eukaryotes Metagenome
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10sediment metagenome Metagenome
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10(Table 2.2.1.1) Abundance of sympagic meiofauna of sea-ice core IO-13
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9Herbicide-incubated GBR lagoon microbiomes Targeted loci environmental
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9Marine metagenome ICM_GPS
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9(Table 2.2.1.1) Abundance of sympagic meiofauna of sea-ice core IO-9
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9Depth dependent (0-5,000 m) and seasonal variability in archaeal community structure in the subarctic and subtropical western North Pacific.
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8Comparative study in validity of three regions of 18S-rRNA for eukaryote amplicon sequence analyses
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8Phytoplankton sampling in the coastal waters of south eastern Tasmania, Australia (2009-2015)
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8Seawater metagenome Targeted loci environmental
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8(Table 2.2.1.1) Abundance of sympagic meiofauna of sea-ice core IO-11
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8(Table 2.2.1.1) Abundance of sympagic meiofauna of sea-ice core IO-2
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8Submarine Ligurian Canyons Water Prokaryotic and Protist Communities
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8uncultured marine eukaryote Targeted loci environmental
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8Geographically tagged INSDC sequences
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8Protistan communities of the upper Arctic Ocean (18S SSU-rRNA Targeted Locus)
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7Microbial Community Diversity Response to a Changing Arctic Ocean
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7Marine metagenome ICM_WBS
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7Marine planktonic ciliates (phylum Ciliophora, subclasses Oligotrichia and Choreotrichia): SSU rDNA
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7(Table 2.2.1.1) Abundance of sympagic meiofauna of sea-ice core IO-1
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7Microbial eukaryote 454 Roche sequencing in estuarine ecosystems
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7Structuring effect of environmental variables on protistan diversity patterns in two anoxic marine basins
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7Structure and function of contemporary food webs on Arctic shelves: A panarctic comparison. The pelagic system of the Kara Sea- communities and components of carbon flow
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6Characteristics of eukaryotic plankton community in the Coastal Waters of Rongcheng by Illumina sequencing
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6rDNA amplicon sequencing of Western North Atlantic microbial community
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6Oxygen minimal zone Targeted loci environmental
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6Nivå Bay species list, Zealand, Denmark
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6Composition and genetic diversity of picoeukaryotes in subtropical coastal waters as revealed by 454 sequencing-by-synthesis
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6marine sediment Raw sequence reads
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6Environmental zooplankton Targeted Locus (Loci)
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5Diversity of microbial community (bacteria, micro-eukaryotes and fungi) in the Passage of Lascaux Cave.
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5Coastal Marine Environment Targeted loci environmental
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5(Table 2.2.1.1) Abundance of sympagic meiofauna of sea-ice core IO-3
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5(Table 2.2.1.1) Abundance of sympagic meiofauna of sea-ice core IO-6
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5Phytoplankton samples - 2005/06 V3 BROKE-West
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5Marine protists Metagenome
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5Eukaryote diversity assessment of sediments of the Western English Channel
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5Microbial community structure of chronically polluted marine sediments from a cold region of the southern hemisphere
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5microbial community diversities of Tuosu Lake
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5Evaluation of filtration and DNA extraction methods for environmental DNA biodiversity assessments across multiple trophic levels.
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5Zooplankton Abundancies White Sea, 1972
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5Protistan plankton diversity along salt gradient
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5Microbial diversity in shallow water hydrothermal sediments of Gueishan Island, Taiwan
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5Whale fall
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4sediment metagenome Raw sequence reads
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4Marine metagenome ICM_LCR
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4marine metagenome Raw sequence reads
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4seawater metagenome Metagenome
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4Macroalgal Morphology affects composition and settlement of microbial communities
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4Microbial eukaryotes present in a Norwegian coastal ecosystem and in the gut content of Calanus copepods from Raunefjorden
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4(Table 2.2.1.1) Abundance of sympagic meiofauna of sea-ice core IO-7
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4GBIF-D Protozoa data collection
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4Herbarium of Umeå University (UME)
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4Polymetallic nodule field Targeted loci environmental
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3Sediment Microcosm Metagenome
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3Asia-Pacific Dataset
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3Green Edge microcosms Raw sequence reads
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3Microbial community structure and dynamics in the oxygen minimum zone of the Northeast subarctic Pacific Ocean
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3Metagenomic approach for studying picoeukaryotes in a extreme oligotrophic marginal sea (South Adriatic Sea) during winter mixed conditions
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3Marine sediment metagenome ICM_DSE
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3Sbp-BioBlitz2017_60years-BiodiversityData
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3Plankton sample collected from Nanaimo Harbour Targeted Locus (Loci)
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3Caracterización de fauna y flora para el establecimiento de límites funcionales de humedales en tres ventanas piloto: Ciénaga de la Virgen, Ciénaga Zapatosa y Complejo de humedales Paz de Ariporo - Hato Corozal
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3California Current System Long Term Ecological Research P1604 (CCS_LTER_P1604) Targeted loci environmental
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3Microbial community diversity in Arctic marine sediments and Planktonic microbial
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3Bayside Harbour, NS, Canada (plankton SSU library 454 sequencing)
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3microbial diversity Raw sequence reads
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3marine metagenome Targeted Locus (Loci)
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3Taxonomic composition of microbial communities in coastal Arctic sediments
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3Gulf Oil Spill underwater oil plume samples Targeted Locus (Loci)
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3Marine sample from an Antarctic Bay Raw sequence reads
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3Uncultured eukaryote community Targeted loci environmental
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2Active microbial eukaryotes amidst a marine subsurface RNA paleome
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2Tucurui_Metagenoma_MGRAST
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2Metagenome microbial communities of bottom sediments of the Kara Sea
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2Marine metagenome ICM_AWP
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2marine sediment metagenome Targeted loci environmental
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2Geotraces Raw sequence reads
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2Meiobenthos nSSU metagenetic meiobenthic data
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2Microbial eukaryotes in an Arctic under-ice spring bloom north of Svalbard.
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2Assessing the microbial diversity in Cape Comorin ocean water
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2Uncultured marine eukaryotes Targeted Locus (Loci)
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2Nanticoke Harbour, ON, Canada (plankton SSU 454 sequencing)
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2Canada Basin Metagenome
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216S rDNA amplicon of Bacteria and Archaea Metagenome
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2St Andrews BioBlitz 2015
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2Bacterial community diverisity
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2Coral
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1Ocean sediment-basement interface Targeted Locus (Loci)
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1International Barcode of Life project (iBOL)
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1Amino acid addition experiment Metagenome
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1Evidence of bacterioplankton community adaption in responses to long-term mariculture disturbance
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1Ascidian and Seawater Metagenome
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1ETNP Targeted Locus (Loci)
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1Microbial eukaryote community structure during early phytoplankton blooms in the naturally iron-fertilized Kerguelen area (Southern Ocean) Targeted Locus (Loci)
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1marine sediment metagenome Targeted loci environmental
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1Microbial diversity of Oslo Fjord Pockmark sediments
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1Active picoeukaryotes in the Eastern Mediterranean Sea
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1Microbial community of Red Sea (16S amplicon) Targeted Locus (Loci)
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1Lake sediment sequencing
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1iNaturalist Research-grade Observations
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1Global Ocean Sampling Expedition
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1Structure and function of picoplankton and virus communities along zonal gradients in the South Pacific Ocean
-
1Microbial communities associated with Eurasian watermilfoil, water and sediment
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1Swan lake bacteria Raw sequence reads
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1Temperature shifts simulating secondary oil recovery
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1marine sediment metagenome Raw sequence reads
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1Arctic sea-ice and sub-ice seawater raw sequence reads
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1Microbial biogeography of French caves
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1Impacts of crude oil and chemical dispersant exposure on marine microbial biofilm formation and steel corrosion
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1Arctic Ocean
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1rRNA, rDNA bacteria thaw ponds Targeted loci environmental
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1uncultured eukaryote Raw sequence reads
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1Schatzinsel Norderney
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1(Table 2.2.1.1) Abundance of sympagic meiofauna of sea-ice core IO-8
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1(Table 2.2.1.1) Abundance of sympagic meiofauna of sea-ice core IO-14
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1(Table 2.2.1.1) Abundance of sympagic meiofauna of sea-ice core IO-5
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1ALA species sightings and OzAtlas
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1Priest Pot species list, Cumbria, Britain
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1Gesamtartenliste Bremerhaven, Helgoland und Sylt
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1Artenvielfalt der Nordsee - Bremerhaven (Dorum-Neufeld)
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1NEW-2
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1The Australian Zooplankton Database (1938 onwards)
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1Characteristics of bacterial communities in the deep sediment Lake Baikal from the regions with oil and gases discharging
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1Baikal Archaea Metagenome
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1Pelagic sediment metagenome of Gulf of Kutch
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1Marine sediment Raw sequence reads
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1Protists tag sequencing of 18S rRNA HV 9
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1Collections of Bioclass, school #179, Moscow
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1Shotgun Metagenome Sequencing of Lake Soyang
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1Life in a toxic environment
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1Coral-associated bacteria demonstrate phylosymbiosis and cophylogeny
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1A long-standing complex tropical dipole shapes marine microbial biogeography
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1Sediment microbial community Random survey
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1There are 3 zooplankton samples from 3 different ponds, we collected sample and use the fresh samples to do DNA extraction directly, then mix them with adjustment guided by the number of species within each of them. At last, use Hiseq-2599 PE-150 to do NGS work
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1Arabian sea sediment samples with protist reads Metagenome
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1Shotgun metagenomic analysis of Lake Paajarvi sediment microbes.
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1Vertical stratification of microbial communities in the Red Sea revealed by 16S rDNA pyrosequencing
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1Nitrate-storing microorganisms in sediments of the Bornholm Basin
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1Microbial eukaryotes Metagenome
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1Microbial diversity associated with copepods in the North Atlantic subtropical gyre
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1Equatorial Pacific Ocean Targeted loci environmental