Occurrence of Eukaryotes in the size fraction >300 micrometres, collected worldwide during the Tara Oceans expedition (2009-2013) using a Bongo net and analysed on a ZooScan imaging platform

Jean-Baptiste Romagnan; Laetitia Jalabert; Laetitia Jalabert; Natalia Llopis Monferrer; Natalia Llopis Monferrer; Amanda Elineau; Amanda Elineau; Céline Dimier; Céline Dimier; Marc Picheral; Sarah Searson; Stefanie Kandels-Lewis; Stéphane Pesant; Jean-Olivier Irisson; Fabien Lombard; Lars Stemmann; Gabriel Gorsky; Erik Karsenti

doi:10.14284/518

Occurrence of Eukaryotes in the size fraction >300 micrometres, collected worldwide during the Tara Oceans expedition (2009-2013) using a Bongo net and analysed on a ZooScan imaging platform

Citation

Romagnan, J.B., Jalabert, L., Llopiz Monferrer, N., Elineau, A., Dimier, C., Picheral, M., Searson, S., Kandels-Lewis, S., Tara Oceans Consortium Coordinators, Karsenti, E., Pesant, S., Irisson, J.O., Lombard, F., Stemmann, L., Gorsky, G.; (2020) Occurrence of Eukaryotes in the size fraction >300 micrometres, collected worldwide during the Tara Oceans expedition (2009-2013) using a Bongo net and analysed on a ZooScan imaging platform https://dx.doi.org/10.14284/518 accessed via GBIF.org on 2024-11-21.

Description

Tara expeditions sampled the world’s oceans with standardized protocols, putting an exceptional effort into sampling plankton diversity across a large size range, using a combination of water samples and net tows. The efforts to explore the genomic diversity of plankton, through metabarcoding and metagenomics, have led to well publicized papers and have made the renown of Tara. While a similar extensive effort has been put on imaging, the datasets are not public yet. In a limited number of stations, in addition to the usual 5μm -> ~5cm Tara sampling strategy, Bongo net samples were taken during the day and during the night, at the same station; this is the content of this dataset. Using a 300µm mesh net, it cover organisms from 300µm to ~3cm

Additional info

Bongo net (300μm mesh) hauled vertically from 500m depth to the surface, once during the day, and once during the night. Sample preserved in 4% buffered formalin and stored over the long term at the Centre de Collections Planctoniques de Villefranche (CCPv). Sample scanned on a ZooScan, images processed with ZooProcess and sorted taxonomically on EcoTaxa, within the Plateforme d'Imagerie Quantitative de Villefranche (PIQv). The PIQv and CCPv platforms are part of EMBRC-France, a national Research Infrastructure supported by ANR, under the reference ANR-10-INSB-02.

Taxonomic Coverages

urn:lsid:marinespecies.org:taxname:104074

Acartiidae
rank: family

urn:lsid:marinespecies.org:taxname:882

Annelida
rank: phylum

urn:lsid:marinespecies.org:taxname:104077

Augaptilidae
rank: family

urn:lsid:marinespecies.org:taxname:104079

Calanidae
rank: family

urn:lsid:marinespecies.org:taxname:1100

Calanoida
rank: order

urn:lsid:marinespecies.org:taxname:104669

Calocalanus pavo (Dana, 1849)
rank: species

urn:lsid:marinespecies.org:taxname:104080

Candaciidae
rank: family

urn:lsid:marinespecies.org:taxname:104081

Centropagidae
rank: family

urn:lsid:marinespecies.org:taxname:1080

Copepoda
rank: class

urn:lsid:marinespecies.org:taxname:104085

Eucalanidae
rank: family

urn:lsid:marinespecies.org:taxname:104086

Euchaetidae
rank: family

urn:lsid:marinespecies.org:taxname:1086

Eumalacostraca
rank: subclass

urn:lsid:marinespecies.org:taxname:1128

Euphausiacea
rank: order

urn:lsid:marinespecies.org:taxname:106267

Evadne Lovén, 1836
rank: genus

urn:lsid:marinespecies.org:taxname:1410

Foraminifera
rank: phylum

urn:lsid:marinespecies.org:taxname:104087

Heterorhabdidae
rank: family

urn:lsid:marinespecies.org:taxname:1205

Hyperiidea
rank: suborder

urn:lsid:marinespecies.org:taxname:106422

Oithonidae
rank: family

urn:lsid:marinespecies.org:taxname:106266

Penilia
rank: genus

urn:lsid:marinespecies.org:taxname:345868

Phaeodaria
rank: subclass

urn:lsid:marinespecies.org:taxname:109444

Pyrocystaceae
rank: family

urn:lsid:marinespecies.org:taxname:582420

Rhizaria
rank: infrakingdom

urn:lsid:marinespecies.org:taxname:104106

Temoridae
rank: family

urn:lsid:marinespecies.org:taxname:958

Tomopteridae
rank: family

Geographic Coverages

EurOBIS calculated BBOX > station Bounding Box

World Oceans

Bibliographic Citations

Contacts

Jean-Baptiste Romagnan
originator
Sorbonne Université

Laetitia Jalabert
originator
Sorbonne Université

Laetitia Jalabert
originator
Sorbonne Université; Sorbonne Université/CNRS, Institut de la Mer de Villefranche

Natalia Llopis Monferrer
originator
Sorbonne Université

Natalia Llopis Monferrer
originator
Sorbonne Université; Sorbonne Université/CNRS, Laboratoire d'Océanographie de Villefranche

Amanda Elineau
originator
Sorbonne Université

Amanda Elineau
originator
Sorbonne Université; Sorbonne Université/CNRS, Institut de la Mer de Villefranche

Céline Dimier
originator
Sorbonne Université

Céline Dimier
originator
Sorbonne Université; Sorbonne Université/CNRS, Station Biologique de Roscoff

Marc Picheral
originator
Sorbonne Université

Sarah Searson
originator
Sorbonne Université

Stefanie Kandels-Lewis
originator
European Molecular Biology Laboratory

Stéphane Pesant
originator
University of Bremen; Centre for Marine Environmental Sciences
DE
email: thor@marum.de
userId: https://orcid.org/0000-0002-4936-5209

Jean-Olivier Irisson
originator
Sorbonne Université

Fabien Lombard
originator
Sorbonne Université

Lars Stemmann
originator
Sorbonne Université

Gabriel Gorsky
originator
Sorbonne Université

Erik Karsenti
originator
European Molecular Biology Laboratory

Tara Oceans Consortium Coordinators
originator
Tara Oceans Consortium

Jean-Olivier Irisson
metadata author
Sorbonne Université; Sorbonne Université/CNRS, Laboratoire d'Océanographie de Villefranche

Fabien Lombard
administrative point of contact
Sorbonne Université; Sorbonne Université/CNRS, Laboratoire d'Océanographie de Villefranche