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GBIF.org (01 October 2021) GBIF Occurrence Download https://doi.org/10.15468/dl.vf8cuy
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1kINSDC Host Organism Sequences
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906Marine metagenomes Metagenome
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855INSDC Sequences
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633Compost microbe establishment and growth in agricultural soils
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594MGYS00005313
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579Soil bacterial diversity is associated with human population density in urban greenspaces
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527Bacerial and archaeal diversity in Central Park
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506Organic agricultural field soil Raw sequence reads
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50116S amplicons New Zealand agricultural soils
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387Soil microbial distribution
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351Bacterial diversity and community composition in grassland and forest soils of the German Biodiversity Exploratories
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329Who eats the tough stuff DNA stable isotope probing (SIP) of bacteria and fungi degrading 13C-labelled lignin and cellulose in forest soils
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281Soil Microbial communities from weed germination bioassay targeted loci environmental
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265MICROBIS database
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265Soil bacterial communities (Hainich National Park)
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261Response of soil bacteria to anthropogenic soil variables at large spatial scales
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200Raw sequence reads from soil relic DNA study
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178uncultured prokaryote Targeted loci environmental
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165Non-target effects of Metarhizium brunneum on soil microbial communities
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164Soil microbial diversity in the Maintenance of Exotic vs. Native Diversity experiment (depth study)
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146Microbial community structure is affected by cropping sequences and bio-covers under long-term no-tillage
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91marine metagenome Metagenome
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88Diversity of microbial community (bacteria, micro-eukaryotes and fungi) in the Passage of Lascaux Cave.
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85Microbial communities associated with Eurasian watermilfoil, water and sediment
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85Plant niche rather than soil or species shapes the microbiota
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83INSDC Environment Sample Sequences
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76Soil marker gene sequences across the Nutrient Network
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65It was verified the impact of irrigation treatments (wet, optimal, dry and very dry) and three potato cultivars on soil microbial community.
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62Soil microbial response to organic disturbances
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55Bacterial 16s Amplicon Sequencing of the Atlantic Ocean
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52Future climate change affects the microbiome and condition of habitat-forming kelp
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50Nahant Collection
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48estuary metagenome Raw sequence reads
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47Temporal effect of plant diversity and oiling on nitrogen cycling in marsh sediments
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46EMOSE (2017) Inter-Comparison of Marine Plankton Metagenome Analysis Methods
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46Temporal variation in pesticide biodegradation
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43Microbial biogeography of French caves
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41Microbial diversity in the Benguela coastal upwelling system as derived from 16S rRNA sequencing and RNA Stable Isotope Probing (SIP)
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36Bacterial Diversity in the East China Sea
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36North Pacific Subtropical Gyre Microbial Community
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34Reciprocal transplantation experiment of salt marsh sediments Targeted loci
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34Marine Bacteria 16S V4 Raw sequence reads
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31Biological Impacts of Ocean Acidification
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29Sediment Metagenome Raw sequence reads
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27Zostera Marina Ammonification environmental
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27Bacteria exposure experiment North Sea
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27Bacterial Biomarkers of Marcellus Shale Activity in Pennsylvania
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26Impact of rainforest transformation on phylogenetic and functional diversity of soil prokaryotic communities in Sumatra (Indonesia)
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25Development and validation of a multi-trophic metabarcoding biotic index for benthic organic enrichment biomonitoring using a salmon farm case-study.
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24Seasonal and spatial diversity of bacterial communities in marine sediments of Ningbo Xiangshan Coastal Ocean
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23US East Coast Salt Marshes Targeted Locus (Loci)
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22Microbial populations of Lascauxs Apse in relation to collembola and black stains on cave walls.
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21Sediment surface microbial community changes due to phytoplankton addition
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21ADDOMEx Tier 3 Experiments: Mesocosm Si with Gulf of Mexico coastal waters
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19Drinking water distribution system biofilm samples Metagenome
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18Queensland Marine Sediment
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18soil metagenome Raw sequence reads
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18Mariana and Kermadec Trench sediment 16S rRNA gene sequencing
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18Abundance, diversity and distribution of Legionellales in wet environments in Sweden
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17Prokaryotic microbial communities structure in the headwater watchment of Dongjiang River in the south of China
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17Polymetallic nodule field Targeted loci environmental
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16Marine methane seep Targeted Locus (Loci)
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16Time course change of microbial community in tsunami sediment caused by the Great East Japan Earthquake
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16Coral
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1516S Amplicon Data from an Antarctic Cold Seep
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15Taxonomic study of endospores in a marine sediment
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15Microbial Biogeography and Potential Ecological Function Deep Indian Ocean Ridge
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14Herbicide-incubated GBR lagoon microbiomes Targeted loci environmental
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14Microbial diversity in benthic stream sediment
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13Effects of Fecal Input, Environmental Conditions, and Environmental Sources on Enterococci Concentrations in an Estuarine Ecosystem
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13Temperature shifts simulating secondary oil recovery
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13Bacterial communitiy compositions on natural and artificial substrates in the Spermonde Archipelago, Indonesia
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13Composition and Genetic Diversity of Microbial Communities in Subtropical Coastal Wetland Sediments
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1316S sequencing of environmental samples to test the impact of sediment source
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13Coral-associated bacteria demonstrate phylosymbiosis and cophylogeny
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13Microbial populations of Lascauxs Apse in relation to collembola and black stains on cave walls.
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12Thermophilic endospores in temperate sediments
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12SCHEMA_Sediment
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12Microbial biogeography of 925 geothermal springs in New Zealand
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11Bacterial 16S rRNA gene sequencing of Antarctic soil
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11Lake sediment sequencing
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10Po river Prodelta and Mar Piccolo of Taranto surface sediments bacterial communities targeted loci
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10A practical introduction to microbial molecular ecology through the use of iChips
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9Saltern of Margherita di Savoia Metagenome
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9Artificial stream sediment raw sequence reads
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9marine sediment metagenome Metagenome
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9Ocean crust Targeted Locus (Loci)
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9Coastal Sediment Bacterial Community Alterations in Association with Sudden Vegetation Dieback
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9marine metagenome Metagenome
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9Soil metagenome from healthy and unhealthy agricultural soil
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9CCA_pathobiome
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816S amplicons Subtropical Frontal Zone New Zealand
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8Microbial community in on-site tsunami sediment caused by the Great East Japan Earthquake
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8Archaea
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8Impacts of crude oil and chemical dispersant exposure on marine microbial biofilm formation and steel corrosion
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8the under-explored coal gangue and the adjacent acid mine drainage creek soil Raw sequence reads
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8Microbial diversity of marine sediments from Ross Sea
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8Comparative 16S analysis of hydrothermal vent samples from the Mid-Atlantic Ridge (MAR)
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8Biological rejuvenation of iron oxides in bioturbated marine sediments
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8Bacterial communities in agricultural soils under contrasting agronomic managements and biomes of Argentina
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7Macroalgal Morphology affects composition and settlement of microbial communities
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7Chandeleur Island 2016 Amplicon Study Raw sequence reads
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7microbial community composition of marine water and sediment
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7Marine bacteria metagenome
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716S data describing Antarctic benthic sediment
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6Marine sediment microbial communities in the presence of macrophytes
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6Marine metagenomes from the bioGEOTRACES project
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6Microbial diversity in the Tongyeong-Geoje coastal area of Korea2
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6Bacterial diversity in snow from mid-latitude mountain areas: Alps, Eastern Anatolia, Karakoram and Himalaya.
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6Temporal dynamics of the particle-attached and free-living microbial communities from coastal seawater
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6The rhizosphere microbiome of burned holm-oak: potential role of the genus Arthrobacter in the recovery of burned soils
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6Assessing the effects of salmon farming seabed enrichment using bacterial community diversity and high throughput sequencing
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6FBIP: Diversities of microbiomes from South African arid and natural soils
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6marine sediment metagenome Targeted loci environmental
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6Life in a toxic environment
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6Effects of organic matter manipulation on archaeal, bacterial, and fungal community assembly
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6CEFS_16S_ITS
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6Nuunat- ORMS formation during oil biodegradation at low temperature
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6Variations in prokaryotic community assembly and predicted metabolic potential of surface sediments with geography in the coastal northern Zhejiang, East China Sea
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5DEEPEND: Microbiome and bacterioplankton rRNA gene sequence data collected from Gulf of Mexico seawater samples. Cruises DP03 and DP04 from Jan 2016 - December 2016
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5Heterogeneity of methane seep microbiomes in the NE Pacific
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5Newfoundland sediment pyrosequencing
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5International Collection of Microorganisms from Plants (ICMP)
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5Groundwater microbiome
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5photoautotrophic_biofilm
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5Hot springs Metagenome
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5Oil-water intephase microbial community analysis Raw sequence reads
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5marine sediment metagenome Raw sequence reads
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5Marine sediment amplicon Targeted loci environmental
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5Sediment of acid mine drainage Targeted loci environmental
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5Bacterias y Arqueas de la transición Andino-Amazónica del departamento del Caquetá - Proyecto Colombia BIO
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5Uncultured Environmental Isolate Targeted loci environmental
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5Global Malaspina 2010 deep ocean expedition - rRNA pyrotags
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5marine sediment metagenome Raw sequence reads
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5Marine (Aarhus) and freshwater (Lake Constance) sediment Raw sequence reads
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5Sea spray aerosols at Three California Beaches
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5Tyne oil spill snorkels Raw sequence reads
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4resuscitation mechanisms during enrichment culture
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4Sediment bacterial diversity
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4Bacterial community profiles in a bioreduced uranium contaminated site after reoxidation
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4Oceanic microplankton do not adhere to the latitudinal diversity gradient
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4surface sediment Raw sequence reads
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4Aquifer sediment nitrate reducing community change
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4Freshwater sediment Raw sequence reads
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4Diversity of bacterioneuston and bacterioplankton in coastal waters of Misaki, Japan
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4Microbial ecology of bacteiral community in sediment from adjacent waters of Rushan Bay
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3Metagenome from mudbank Area,Alappuzha Kerala India
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3Antimony contaminated sediments Raw sequence reads
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3PCB-contaminated sediment Genome sequencing
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33Soil16S
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3eDNA_Subseafloor
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3Ocean Acidification baceria sample Targeted loci environmental
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3Baselines Initiative 16S rRNA gene dataset: Baselines Amplicon Release 1 (R1) Caribbean Sea near Curacao (including saline pond samples in Curacao) 2015
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3Temporal sampling of marine metagenomes from Station ALOHA and BATS
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3Biogeography of coastal wetland bacterial communities experiencing sudden vegetation dieoff
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3A diverse and metabolically active microbial community persists in deep subsurface clay borehole water
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3Nutrient addition mesocosm experiment Targeted Locus (Loci)
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3Marine sediment metagenome
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3Impact of a major inflow event on the composition and distribution of bacterioplankton communities in the Baltic Sea
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3Zooplankton microbiome of the Amazon River Plume and western trophic North Atlantic
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3coastal sediments Targeted Locus (Loci)
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3Diversities of bacteria and archaea in Sanya mangrove sediments
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3Baltic Sea
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316s data marine community of L4 station
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3Uncultured Microbial Consortia in Industrialized Sites on Egypt''s Red Sea Coast Targeted loci environmental
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2MeHg Coal Ash
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216S rRNA metagenomic investigation of arsenotrophic bacteriome of ground water and soil from arsenic-prone area of Bangladesh
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2Aarhus Bay sediment PCR amplified product sequencing
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2Gulf of Mexico open ocean Targeted Locus (Loci)
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2marine sediment metagenome Targeted loci environmental
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2Marine methane seep Targeted Locus (Loci)
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2Microbial community in PAH-contaminated riverine sediments
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2Microbial community in marine sediments
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2Baselines Initiative 16S rRNA gene dataset: Baselines Amplicon Release 1 (R1) Indian Ocean 2015
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2coastal sediment diversity study
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2Microbial communities associated with Juncus roemerianus and Spartina alterniflora vegetated sediments in Louisiana saltmarshes
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2seawater metagenome Genome sequencing and assembly
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2Intertidal Mixing Zone Targeted Locus (Loci)
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2Santa Monica Basin seep sediment incubations to assess C and N sources for F430 synthesis
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2Limited influence of primary treated sewage waters on bacterial abundance, production and community composition in coastal seawaters
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2permafrost metagenome Targeted loci environmental
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2sediment metagenome Metagenome
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216S rRNA amplicon from marine Bacteria Raw sequence reads
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2seawater bacterial community Raw sequence reads
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2sediment metagenome Metagenome
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2the assembly of abundant and rare bacterioplankton subcommunities in three subtropical bays
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2Baselines Initiative 16S rRNA gene dataset: Baselines Amplicon Release 1 (R1) North Pacific Line-67 2009
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216S rRNA genes Random survey
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2Study of microbial diversity from sediment samples of the SaiGon-DongNai system
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2Marine Sediment from the Berkeley Bay Targeted Locus (Loci)
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2Natural seawater bacterial community in exopolysaccharides utilization
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2Microbial community structure or iron oxyhydroxides rich mound in Satsuma Iwo-jima, Japan
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2marine sediment metagenome Targeted loci environmental
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2Mediterranean Contaminated Pelagic communities
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2Hydrothermal Deposit Targeted Locus (Loci)
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2Pelagic sediment metagenome of Gulf of Kutch
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2Bacterial community of cold seeps Metagenome
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2The Indigo Project: a global citizen science Ocean survey
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2Bacterial communities from the water column and the surface sediments along a transect in the East Sea (Sea of Japan)
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2Microbial indicators of anthropogenic marine pollution identified by 16S and 18S metagenomic library analysis
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2Bacteria community in the southern East China Sea
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2particle-attached and free-living bacteria kongsfjorden
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2Coastal seawater influenced by the municipal effluents Raw sequence reads
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2Narragansett Bay, RI Sediments Targeted Locus (Loci)
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2surface sediment Raw sequence reads
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1Ocean sediment-basement interface Targeted Locus (Loci)
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1Spatial and environmental variation in whole microbial communities in Fildes Bay, King George Island, Antarctica Raw sequence reads
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1DOW-2
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1Sediment metagenome
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1A comparison of microbial community composition in four contrasting sediments in the Celtic Sea
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1Abalone seed nursing ecosystem Metagenome
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1Marine sediment Raw sequence reads
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1Diversity of SE Pacific benthic Bacteria and Archaea communities Targeted Locus (Loci)
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1Spatial Variation of Coastal Bacterioplankton Community along a Nitrogen and Phosphorus Co-pollution Gradient
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1The effect of salinity in prokaryotic communities in an estuary
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1FBIP: Endophytic bacterial communities in the fynbos biome
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1marine sediment metagenome Metagenomic assembly
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1Sediment bacterial 16S in Hachiro polder.
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1Bacterial Biogeography of Coastal Water in the Northern East China Sea
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1Pelagic Microbiome: viruses to protists. 16S and 18S data from oceanic samples collected at the chlorophyll maximum.
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1Comparison of marine sediments from the Beguela upwelling zone
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1Loihi Seamount Targeted loci environmental
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1ADDOMEx
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1Surface sediment of Yellow Sea, Bohai Sea and north East China Sea Metagenome
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1Sequences obtained from two sponge genera (Hyrtios, Aiolochroia), one zoanthid (Palythoa), and marine sediments. Metagenome
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1Illumina high-throughput sequencing of bacterial community
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1dsrB gene diversity in marine coastal sediments in Aarhus Bay, Denmark
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1Genetic potential for pentachlorophenol degradation at historically contaminated groundwater sites
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1atmospheric depositon effect on bacterial diversity
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1sediment metagenome Raw sequence reads
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1Microbial diversity of Oslo Fjord Pockmark sediments
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1BACTERIAL COMMUNITIES IN THE ACID AND THERMOPHILIC CRATER-LAKE OF THE VOLCANO "EL CHICHON", MEXICO
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1Nitrogen cycling microbes in the surface sediments of the South China Sea
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1Bacterial biogeography of a High Arctic ice cap
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1Swan lake bacteria Raw sequence reads
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1ZRD sediment metagenome Metagenome
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1Assessing the microbial diversity in Cape Comorin ocean water
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1BSM marine Targeted Locus
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116S rRNA metagenomic investigation of arsenotrophic bacteriome of ground water and soil from arsenic-prone area of Bangladesh
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1Development and validation of a marine experimental life support system for accessing synergistic effects of climate change and oil pollution on microbial communities
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1Microbiome variation in Agaricia undata with distinct depth distribution ranges
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1Diversity of archaeal and bacterial 16S rRNA gene in marine sediment in Aarhus Bay
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1rRNA, rDNA bacteria thaw ponds Targeted loci environmental
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1Eastern Mediterranean Sea Lignin and Xylan enrichments
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1marine sediment metagenome Raw sequence reads
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1PCE/TCE dechlorinating microbial community and dehalogenase genes from Wonju Stream, South Korea
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1Uncultered bacterium Targeted Locus (Loci)
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1marine metagenome Raw sequence reads
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1Incubation of marine methane seep sediments with a bioorthogonal amino acid
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1Microbial communities associated with ferromanganese nodules and the surrounding sediments
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1DSMZ Prokarya Collection Catalogue
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1Microbial diversity of marine sediments
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116S rDNA amplicon of Bacteria and Archaea Metagenome
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1NEW-2
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1Coral or reef-seawater associated bacteria Targeted Locus (Loci)
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1Hypersaline sapropels Targeted loci environmental
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1Copepod induced bacterial community Raw sequence reads
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1DOM nutrient stress experiment bacterial communities
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1Microbial diversity and skin mucosal microbiota in farmed Atlantic salmon with ulcerative disorders, raw sequence reads
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1uncultured prokaryote Targeted loci environmental
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1Sediment river Genome sequencing and assembly
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1Microbial communities in marine surface water
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116S rRNA amplicon sequences of Baltic Sea bacterioplankton
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1Transplant and re-transplant microcosms of Baltic Proper and Bothnian Sea bacterioplankton Targeted Locus (Loci)
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1Camargue soil and sediment 16S community profiling
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1Mediterranean mud volcano flow Targeted loci
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1Marine sediment Raw sequence reads
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1Eukaryotic diversity in Central Park
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1marine sediment Raw sequence reads
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1Gulf Oil Spill underwater oil plume samples Targeted Locus (Loci)
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1Microbial Processes and Biodiversity: OCEAN
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1microbial community diversities of Tuosu Lake
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1Bacterial community structure and their predicted functions in coastal sediments
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1Microbial diversity in four Mediterranean irciniid sponges
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1Metabarcoding surveys of the Arctic marine environment
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1Seawater free living bacterioplankton
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1Meta_Kosmos
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1Cave sediment Metagenome
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1Benthic Ocean Acidification
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1Enhanced pyrene and benzo[a]pyrene degradation by plant root and SMFC
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1Sundarbans estuarine ecosystem Metagenome
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1Southern Ocean microorganisms Targeted Locus (Loci)
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1Microbial communities in estuarine sediments
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1Baltic Sea high-frequency temporal study 2012 at the Linnaeus Microbial Observatory Targeted Locus (Loci)
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1sediment metagenome Raw sequence reads
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1aquatic bacterial metagenome Raw sequence reads
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1soil bacteria and fungi Targeted loci environmental
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1Antarctic Snow Algae 2014/15 16S and 18S Illumina Seq of snow algae communities around Ryder Bay, Antarctica
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116S rDNA sequencing
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1Metagenomes of Sediments from Red Sea Atlantis II and Discovery Deep Brine Pools
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1Long distance electron transfer by cable bacteria in aquifer sediments
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1Transitional subsurface-to-surface microbial diversity in a terrestrial serpentinizing seep (Manleluag, Pangasinan, the Philippines)
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1Variation in freshwater stream sediment community 16S rRNA profiles along an urbanization gradient
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1Bacterial population dynamics in a natural assemblage upon the addition of artificial alginate particles and alginolytic Alteromonas macleodii
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1bacterial community in the deep-sea surface sediments
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1Mudflat sediment Metagenome
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1marine sediment metagenome Raw sequence reads
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1Caspian Sea Sediment - 16S Survey Targeted Locus (Loci)
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1UK coast natural seawater Genome sequencing
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1Spatial variation of bacterioplankton in south Atlantic Bight