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GBIF.org (23 August 2023) GBIF Occurrence Download https://doi.org/10.15468/dl.s2wzmh
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Download as TSV
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40kMarine metagenomes Metagenome
-
11kAmplicon sequencing of Tara Oceans DNA samples corresponding to size fractions for protists.
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9kNahant Collection
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6kEukaryotic diversity in Central Park
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4kMetabarcoding surveys of the Arctic marine environment
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3kSHARK - Regional marine environmental monitoring, recipient control and monitoring projects of Phytoplankton in Sweden since 1985
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2kAssembly and activity of microbial communities in the Pacific temperate rainforest
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1kMarine metagenomes from the bioGEOTRACES project
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1kDevelopment and validation of a multi-trophic metabarcoding biotic index for benthic organic enrichment biomonitoring using a salmon farm case-study.
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1kEcological Genomics of a Seasonally Anoxic Fjord; Saanich Inlet
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1kanchialine metagenome Raw sequence reads
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1kSOLA Raw sequence reads
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1kEMOSE (2017) Inter-Comparison of Marine Plankton Metagenome Analysis Methods
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1kOcean Sampling Day (OSD) 2014: AUTHORITY-RAW amplicon and metagenome sequencing study from the June solstice in the year 2014
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1kMarine Water Column Samples Targeted loci environmental
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1kRed Sea microbial plankton Raw sequence reads
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813Benthic biodiversity in four pairs of Norwegian lakes
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731SHARK - National marine environmental monitoring of Phytoplankton in Sweden since 1983
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705Temporal variation in pesticide biodegradation
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702Protist Diversity in the East China Sea
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689EGB sediment data (raw sequence reads)
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684INVESTIGATING THE MICROBIAL EUKARYOTIC COMMUNITIES IN THE SURFACE WATERS OF THE ARAFURA SEA AND CORAL SEA
-
663Picoplankton 18S rRNA genes from the tropical and sub-tropical global-ocean sampled during the Malaspina-2010 expedition
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593eDNA samples from the surface ocean to the seafloor collected by RV Investigator voyage IN2017_V01 - Linking Modern and Paleo-Genetics at the Sabrina Coast East Antarctica (2017)
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584Nutrient addition mesocosm experiment Targeted Locus (Loci)
-
572Biodiversidad identificada por medio de metabarcoding asociada al proyecto piloto de investigación integral - PPII Platero, departamento de Santander
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561marine metagenome Metagenome
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549Water and Sediment samples Targeted loci environmental
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51818S Monterey Bay Time Series: an eDNA data set from Monterey Bay, California, including years 2006, 2013 - 2016
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507Temporal sampling of marine metagenomes from Station ALOHA and BATS
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496Picoplankton 18S rRNA gene sequences (V4 region, DNA and RNA) from Vertical Profiles (surface to 4000m depth) sampled during the Malaspina 2010 circumglobal expedition
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480Exploring Fronts With Multiple Robots Schmidt Ocean Institute Cruise to the Pacific Ocean in 2018
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478Eukaryotic natural population from Northern Baffin Bay - Raw sequence reads
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473Extracellular DNA marine sediment Targeted Locus (Loci)
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457California Current Cruise CCE-P1408 Process Cruise #6
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445Protists community in the southern East China Sea
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418Eucaryotic microbial communities structure in the headwater watchment of Dongjiang River in the south of China
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417Amundsen Gulf Overwintering Eukaryote Community
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415sediment metagenome Raw sequence reads
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401marine sediment metagenome Metagenome
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395The national database for marine data (MADS)
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383Amplicon sequencing of Tara Oceans RNA samples corresponding to size fractions for protists.
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382Polymetallic nodule field Targeted loci environmental
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368Uncultured eukaryotes Targeted Locus (Loci)
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346CARBOM cruise 2013 flow cytometry sorted phytoplankton
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319Microbial Processes and Biodiversity: OCEAN
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307Sediment Metagenome Raw sequence reads
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301ARMS Jeddah sample Raw sequence reads
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269Arctic microbiome along Svalbard Cross Shelf transects
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262Effects of organic matter manipulation on archaeal, bacterial, and fungal community assembly
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257Sea ice and seawater Raw sequence reads
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256Comparative study in validity of three regions of 18S-rRNA for eukaryote amplicon sequence analyses
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252MICROBIS database
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243Norwegian Biodiversity Information Centre - Other datasets
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229Arctic Ocean Diversity
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222Metagenomic barcode approach of the ExStream Project 2014 for eukaryotes
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217Marine sediment metagenome raw sequence reads
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214SAR amplicon from community incubated with various nanophytoplankton in microcosm
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201Phytoplankton from the White Sea, Barents Sea, Norwegian Sea and Arctic Basin 1993-2003
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183Microbial eukaryotes
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183Marine metagenome ICM_JRV
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176Electron Micrograph Database - Marine Specimens
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174Varennes Communities in Contaminated Soils
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172Hakai Institute Oceanography Program Protistan Plankton Timeseries from the Northern Salish Sea, British Columbia, Canada
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171White sea picoplankton Metagenome
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164Hydrate Ridge, OR - Deep sea cold seep ecosystem Targeted Locus (Loci)
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161Sediment of acid mine drainage Targeted loci environmental
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15618S Metabarcoding Genetic Observations of Marine Species in the Port of Wallhamn, Sweden (2022)
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14818S data from: Diversity of Pico- to Mesoplankton along the 2000 km Salinity Gradient of the Baltic Sea (Hu et al. 2016)
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135sea water Picoeukaryotic Community Raw sequence reads Raw sequence reads
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128Marine metagenome ICM_GPS
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128Diet analysis of Japanese sardine and Pacific round herring larvae
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128Marine fungi Raw sequence reads
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125North Sea plastic incubation and reference communities, raw sequence reads
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123Red Sea Zooplankton Raw sequence reads
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115Inner Oslofjorden Phytoplankton Database
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112Marine Microbes from RV Investigator voyage IN2014_E03, Australia (2014)
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106INSDC Sequences
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103Bermuda Atlantic Time-series Study metagenomes
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102Diet analysis of Pacific Bluefin Tuna larvae
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99Soil fungal communities of Chilean temperate rainforests
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97Zooplankton communities in the coastal water of northeastern Hokkaido
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95Marine eukaryotes Targeted loci environmental
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93SSU rRNA amplicon of the Arctic Ocean during Winter-Spring Transition
-
92A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes
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90The Australian Phytoplankton Database (1844 onwards)
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89Seawater metagenome Targeted loci environmental
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89Environmental eukaryotes Metagenome
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86Structuring effect of environmental variables on protistan diversity patterns in two anoxic marine basins
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84Gulf of Mexico open ocean Targeted Locus (Loci)
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82Picoplankton 18S rRNA gene sequences (V9 region) from Vertical Profiles (surface to 4000m depth) sampled during the Malaspina 2010 circumglobal expedition
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82Temporal dynamics of eukaryotic microbial diversity at a coastal Pacific site
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81seawater metagenome Metagenome
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81Structure and function of picoplankton and virus communities along zonal gradients in the South Pacific Ocean
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78Shotgun metagenome sequences of Anthelia biocrust samples.
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78Diversity of Microbial Eukaryotes in Sea Waters From Fildes Peninsula,King George Island, Antarctica
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77Eukaryotic protists Metagenome
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71Dutch Foundation for Applied Water Research (STOWA) - Limnodata Neerlandica
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68The Nanoeukaryotic plankton Raw sequence reads
-
66Fungal communities across four coastal marine habitats in North Carolina, USA
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66sediment metagenome Metagenome
-
66uncultured marine picoeukaryote strain:Peuk_V4_NWP1 Raw sequence reads
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64marine metagenome Raw sequence reads
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64marine metagenome Raw sequence reads
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63Microbial community structure and dynamics in the oxygen minimum zone of the Northeast subarctic Pacific Ocean
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63Marine sediment metagenome ICM_DSE
-
62Trace element-contaminated soil Metagenome
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59Microbial communities associated with Eurasian watermilfoil, water and sediment
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58uncultured marine picoeukaryote strain:Peuk_V4_NWP2 Raw sequence reads
-
57Metagenomic investigation of six depths from the anchialine Bundera sinkhole
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57Nivå Bay species list, Zealand, Denmark
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57blocking PCR amplification of metazoan DNA for protistan diversity
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56Nitrate-storing microorganisms in sediments of the Bornholm Basin
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53Biological rejuvenation of iron oxides in bioturbated marine sediments
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52Metagenomic approach for studying picoeukaryotes in a extreme oligotrophic marginal sea (South Adriatic Sea) during winter mixed conditions
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51sediment metagenome Metagenome
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50Latitudinal diversity patterns of pelagic copepods in the Pacific using metagenetic analysis
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49Marine metagenome ICM_WBS
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47Whale fall
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46Moorea Reef Archaea and Eukaryota gene survey
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46Phytoplankton monitoring in the Trieste harbour - North Adriatic Sea (FERRIERA), 2008-2014
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45uncultured eukaryote Raw sequence reads
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45Amplicon-Based Illumina Sequencing Reveals High Diversity of Phytoplankton in the Coastal Waters of Qinhuangdao
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44Eukaryote diversity assessment of sediments of the Western English Channel
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43Microbial eukaryote Metagenome
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42Herbicide-incubated GBR lagoon microbiomes Targeted loci environmental
-
42Oxygen minimal zone Targeted loci environmental
-
42The study includes fungal genetic diversity assessment by ITS-1 next generation sequencing (NGS) analyses. The main the main experimental objects are soils of different classes, quality groups and also subjected to various agrotechnical treatments
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42Depth dependent (0-5,000 m) and seasonal variability in archaeal community structure in the subarctic and subtropical western North Pacific.
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41uncultured marine eukaryote Targeted loci environmental
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41Soil fungal diversity along elevation gradients
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40Coastal Marine Environment Targeted loci environmental
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40Soil metagenome from healthy and unhealthy agricultural soil
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40Nansen Legacy Q3 phytoplankton biodiversity
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39Metagenomic community analysis of marine zooplankton using two plankton nets
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39The Indigo Project: a global citizen science Ocean survey
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34Large variability of bathypelagic microbial eukaryotic communities across the world's oceans
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32INSDC Environment Sample Sequences
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31Nansen Legacy JC2-1 phytoplankton biodiversity
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30envinronment Metagenome
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30Microbial eukaryotes present in a Norwegian coastal ecosystem and in the gut content of Calanus copepods from Raunefjorden
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30Microbial indicators of anthropogenic marine pollution identified by 16S and 18S metagenomic library analysis
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29VAG Mine Pit Pond Metagenome
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28Metagenome analysis of picoeukaryotes from surface seawater
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26Submarine Ligurian Canyons Water Prokaryotic and Protist Communities
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26marine metagenome Targeted Locus (Loci)
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26Nansen Legacy Q3 ice algae biodiversity
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25rDNA amplicon sequencing of Western North Atlantic microbial community
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24California Current System Long Term Ecological Research P1604 (CCS_LTER_P1604) Targeted loci environmental
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24Evaluation of filtration and DNA extraction methods for environmental DNA biodiversity assessments across multiple trophic levels.
-
22Microbial eukaryotes in an Arctic under-ice spring bloom north of Svalbard.
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22Composition and genetic diversity of picoeukaryotes in subtropical coastal waters as revealed by 454 sequencing-by-synthesis
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22Microbial diversity in shallow water hydrothermal sediments of Gueishan Island, Taiwan
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21Shotgun Metagenome Sequencing of Lake Soyang
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20Phytoplankton community composition at station Svartnes, Balsfjord, Norway in June 2017 and June 2018 (sampled with a GoFlow bottle)
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19Biota occurrence data from plankton surveys around New Zealand
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19NMNH Extant Specimen Records (USNM, US)
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18Active picoeukaryotes in the Eastern Mediterranean Sea
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18Nansen Legacy JC2-2 phytoplankton biodiversity
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18Protistan plankton diversity along salt gradient
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17marine metagenome Raw sequence reads
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16aen-q2-phytoplankton
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1616S data describing Antarctic benthic sediment
-
15ADDOMEx Tier 3 Experiments: Mesocosm Si with Gulf of Mexico coastal waters
-
15Uncultured marine eukaryotes Targeted Locus (Loci)
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15uncultured prokaryote Targeted loci environmental
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15Environmental zooplankton Targeted Locus (Loci)
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14Bacterial 16s Amplicon Sequencing of the Atlantic Ocean
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14Marine metagenome ICM_AWP
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14Shotgun Metagenomic Sequencing of the Arctic Ocean during Winter-Spring Transition
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14Priest Pot species list, Cumbria, Britain
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14uncultured prokaryote Targeted loci environmental
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14Metazoan sequencing
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13sediment metagenome Raw sequence reads
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13Assessing the microbial diversity in Cape Comorin ocean water
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1316S rDNA amplicon of Bacteria and Archaea Metagenome
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13Phytoplankton collected in the Po River Delta - North Adriatic Sea (RITMARE Project) 2013-2014
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13microbial diversity Raw sequence reads
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13Abundance, diversity and distribution of Legionellales in wet environments in Sweden
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13Marine sample from an Antarctic Bay Raw sequence reads
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12Saltern of Margherita di Savoia Metagenome
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12NEW-1
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12Nansen Legacy JC2-2 ice algae biodiversity
-
11Nansen Legacy JC1 phytoplankton biodiversity
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11UEL - Coleção Ficológica da Universidade Estadual de Londrina (FUEL-Algae)
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11DSW-2
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11Diversity patterns of uncultured Haptophytes unravelled by pyrosequencing in Naples Bay
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11Global soil organisms
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11Pelagic sediment metagenome of Gulf of Kutch
-
11FUEL-Algae - Coleção Ficológica do Herbário da Universidade Estadual de Londrina
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11Microbial eukaryotes Metagenome
-
10Fringing reef Metagenome
-
10Electron Micrograph Database - Terrestrial and Limnetic Specimens
-
10aen-q4-phytoplankton-biodiversity
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10台灣真菌地理分布系統資料庫之建制與應用(1/4)
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9Marine metagenome ICM_LCR
-
9(Table 1) Abundance of unicellular eukaryotes in ice cores collected during the July 2008 CCGS Amundsen cruise in Darnley Bay
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9ECOPOT_2: Phytoplankton in Flemish waterbodies
-
9NEW-2
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9De novo whole metagenome sequencing studies
-
8Geotraces Raw sequence reads
-
8Mariana and Kermadec Trench sediment 16S rRNA gene sequencing
-
8Guaymas Basin and Sonora Margin sediment Targeted loci
-
8Nansen Legacy JC1 ice algae biodiversity
-
8soil bacteria and fungi Targeted loci environmental
-
8Equatorial Pacific Ocean Targeted loci environmental
-
7Marine metagenome ICM_DOF
-
7Macroalgal Morphology affects composition and settlement of microbial communities
-
7Diatom Community Composition CCS Diel
-
7Limnological Observatory of the Pyrenees - Fitoplancton de lagos pirenaicos
-
7Marine sediment Raw sequence reads
-
7Protists tag sequencing of 18S rRNA HV 9
-
7Cape Darnley Early-Autumn Phytoplankton Bloom, March 2012
-
7Coral
-
6Data on biodiversity of a boreal mire and its hydrographic network (Shichengskoe mire, North-Western Russia)
-
6Successional trajectories of coastal bacterioplankton communities in response to co-exposure of cadmium and phenanthrene
-
6Bacteria community in the southern East China Sea
-
6Invertebrates compiled by W.Block
-
5DOW-2
-
5Kallisti Limnes subsea pools Metagenome Study
-
5Community structure of Archaea in the western North Pacific and the Arctic Ocean
-
5Amplicon sequencing of Tara Oceans DNA samples corresponding to size fractions for large DNA viruses.
-
5Metagenomics of Brava and Tebenquiche lakes microbial mats
-
5Coral-associated bacteria demonstrate phylosymbiosis and cophylogeny
-
5Protist communities in moored long-term sediment traps (Fram Strait, Arctic) Preservation with mercury chloride allows for PCR-based molecular genetic analyses
-
5Sea spray aerosols at Three California Beaches
-
4Coral metagenome ICM_CCB
-
4Queensland Marine Sediment
-
4INSDC Host Organism Sequences
-
416S Amplicon Data from an Antarctic Cold Seep
-
4Taxonomic revision of the Calotheca parvula species group from southern Africa, with descriptions of three new species (Coleoptera, Chrysomelidae)
-
4Diversity and population structure of Marine Group A in the oxygen minimum zone of the Northeast subarctic Pacific Ocean
-
4Methane and dissolved organic carbon fueled microbial loop supports a tropical subterranean estuary ecosystem
-
4Harvard University Herbaria: All Records
-
4A long-standing complex tropical dipole shapes marine microbial biogeography
-
4Pelagic sediment metagenome of Gulf of Khambhat
-
4Ecosystem biomonitoring with eDNA: metabarcoding across the tree of life in a tropical marine environment
-
3DEEPEND: Microbiome and bacterioplankton rRNA gene sequence data collected from Gulf of Mexico seawater samples. Cruises DP03 and DP04 from Jan 2016 - December 2016
-
3water sample Raw sequence reads
-
3Comparison of copper contaminated soils, with similar uncontaminated controls.
-
3Comparative metagenome analysis of normal and arsenic contaminated soils from ballia district, Uttar Pradesh, India
-
3Phytoplankton monitoring in Grado, GO - North Adriatic Sea. 2016
-
3iNaturalist Research-grade Observations
-
3Spirulina necromass degradartion in arctic marine sediments
-
3Microbial diversity in benthic stream sediment
-
3Patrones de variación espacial y temporal de la biodiversidad fitoplanctónica de los cenotes abiertos de Yucatán
-
3Fungal diversity associated with deep-sea asphalt seep mounds
-
3Little Sippewissett Marsh Targeted Locus (Loci)
-
3Microbial community structure of chronically polluted marine sediments from a cold region of the southern hemisphere
-
3Lund Botanical Museum (LD)
-
3The San Pedro Ocean time-series is a marine time-series started circa 1997. This project aims to study ecological and biogeochemical implications of global marine microbial biodiversity.
-
3Standard filtration practices significantly distort planktonic microbial diversity estimates
-
2Bacterial 16S rRNA and fungal ITS Metagenome
-
2Microbial diversity in the Benguela coastal upwelling system as derived from 16S rRNA sequencing and RNA Stable Isotope Probing (SIP)
-
2HUEFS - Herbario da Universidade Estadual de Feira de Santana
-
2Type locality distributions from the World Register of Marine Species
-
2Microbial community in marine sediments
-
2Metagenome data from DNA stable isotope probing of Stiffkey saltmarsh sediment microcosms to investigate methanogenesis from choline
-
2Canadian National Mycological Herbarium
-
2rRNA, rDNA bacteria thaw ponds Targeted loci environmental
-
2Canada Basin Metagenome
-
2aen-q1-phytoplankton-biodiversity
-
2Phytoplankton samples - 2005/06 V3 BROKE-West
-
2GBIF-D Protozoa data collection
-
2Invertebrate Zoology Division, Yale Peabody Museum
-
2Type Localities for organisms and fossils first described from Antarctica
-
2Peruvian eddy shotgun metagenomes
-
2Research on Airborne Ice Nucleating Species
-
2Mediterranean mud volcano flow Targeted loci
-
2Fungal Records Database of Britain and Ireland
-
2Collections of Bioclass, school #179, Moscow
-
2Savu Sea-Indonesia eDNA Dataset
-
2Occurrence de vecteurs de maladies recensés à l'Hôpital de Zone Ouidah-Kpomassè-Tori
-
2Marine Bacteria 16S V4 Raw sequence reads
-
2The Island Project - Fungal communities in boreal forest soils
-
2BCE butterfly data Greece and surrounding countries
-
2Soil marker gene sequences across the Nutrient Network
-
2Registros de hongos en áreas protegidas de la Argentina
-
2Universal Amplicon Sequences (mixed 16S/18S) from GEOTRACES Cruises GA03 and GP13
-
216S rRNA Analysis of Osaka Bay Microbiomes
-
2Bacterial community diverisity
-
1Ocean sediment-basement interface Targeted Locus (Loci)
-
1Kenai National Wildlife Refuge, Alaska (KNWR) Plant observations (Arctos)
-
1Inventaire général de la biodiversité du domaine du Bois de Bouis (IGB/ATBI) - Inventaire général de la biodiversité (IGB/ATBI) Domaine Bois de Bouis - Données algues d'eau douce 2018-2019
-
1Nansen Legacy JC2-1 ice algae biodiversity
-
1Ecological Genomics of the Eastern Tropical South Pacific Oxygen Minimum Zone Metagenome
-
1marine sediment metagenome Targeted loci environmental
-
1ocean bacteria Metagenomic assembly
-
1Marine sediment microbial communities in the presence of macrophytes
-
1Socompa Lake Stromatolite Shotgun Metagenomic Sequencing
-
1Zostera Marina Ammonification environmental
-
1ADDOMEx
-
1IMOS - Phytoplankton Abundance and Biovolume (CPR), Australia (2007 to present)
-
115N methylamine SIP (WCO station L4)
-
1Artportalen (Swedish Species Observation System)
-
1Bacterial 16S rRNA gene sequencing of Antarctic soil
-
1Effects of organic amendments in soil affected by fire in central Chile
-
1CAS Invertebrate Zoology (IZ)
-
1Prokaryotic microbial communities structure in the headwater watchment of Dongjiang River in the south of China
-
1Sbp-BioBlitz2017_60years-BiodiversityData
-
1Marine methane seep Targeted Locus (Loci)
-
1Swan lake bacteria Raw sequence reads
-
1SCHEMA_Sediment
-
1National Trust Species Records
-
1naturgucker
-
1Référentiel taxonomique national (TAXREF) - Inventaire des Collectivités d'outre-mer et de la métropole (ICOM_14) issu des données biogéographiques de TAXREF v14
-
1Nansen Legacy Q2 ice algae biodiversity
-
1DOS-1
-
1Référentiel taxonomique national (TAXREF) - Inventaire des Collectivités d'outre-mer et de la métropole (ICOM_15) issu des données biogéographiques de TAXREF v15
-
1marine sediment metagenome Raw sequence reads
-
1Bacteria in domestic water-storage containers with or without mosquito larvae
-
1Nansen Legacy Q2 ice algae biodiversity slurpgun
-
1USS-2
-
1marine sediment metagenome Raw sequence reads
-
1Bacteria Metagenome
-
1Impact of rainforest transformation on phylogenetic and functional diversity of soil prokaryotic communities in Sumatra (Indonesia)
-
1Global Malaspina 2010 deep ocean expedition - rRNA pyrotags
-
1Amplicon sequencing of Tara Oceans DNA samples corresponding to size fractions for prokaryotes or protist.
-
1marine sediment metagenome Targeted loci environmental
-
1Targeted loci sequencing of anaerobic benzene-degrading enrichment cultures
-
1Life in a toxic environment
-
1Biological survey of lakes and reservoirs from Sardinia and Piedmont (Italy), a georeferenced dataset from the project LIFE INHABIT
-
1Sediment microbial community Random survey
-
1Sundarbans estuarine ecosystem Metagenome
-
1New Zealand Biodiversity Recording Network
-
1Bacteria exposure experiment North Sea
-
1The importance of fouling in the port of Ostend in 1964
-
11)sediments; 2) coral floc Metagenome
-
1Australian Museum provider for OZCAM
-
1Non-target effects of Metarhizium brunneum on soil microbial communities
-
1Arabian sea sediment samples with protist reads Metagenome
-
1marine sediment metagenome Raw sequence reads
-
1New Zealand Fungal and Plant Disease Collection (PDD)
-
1Référentiel taxonomique national (TAXREF) - Inventaire des Collectivités d'outre-mer et de la métropole (ICOM_16) issu des données biogéographiques de TAXREF v16
-
1Microbial diversity associated with copepods in the North Atlantic subtropical gyre
-
1Soil DNA extracted from Robinson Ridge, East Antarctica Raw sequence reads
-
1Niche partitioning of methanotrophs in stratified lakes