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GBIF.org (25 March 2022) GBIF Occurrence Download https://doi.org/10.15468/dl.qsszmd
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10kNEON ticks sampled using drag cloths and tick pathogen status
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3kINSDC Host Organism Sequences
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1kINSDC Sequences
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414Bacerial and archaeal diversity in Central Park
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316Nahant Collection
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268Amplicon sequencing of Tara Oceans DNA samples corresponding to size fractions for protists.
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263Microbial communities associated with Eurasian watermilfoil, water and sediment
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217MICROBIS database
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211uncultured prokaryote Targeted loci environmental
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171Soil marker gene sequences across the Nutrient Network
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15816S amplicons New Zealand agricultural soils
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153MGYS00005313
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118marine metagenome Metagenome
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116Organic agricultural field soil Raw sequence reads
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99Compost microbe establishment and growth in agricultural soils
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87Effects of organic matter manipulation on archaeal, bacterial, and fungal community assembly
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84Marine metagenomes Metagenome
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81Who eats the tough stuff DNA stable isotope probing (SIP) of bacteria and fungi degrading 13C-labelled lignin and cellulose in forest soils
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76INSDC Environment Sample Sequences
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76Niche partitioning of methanotrophs in stratified lakes
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72Sediment surface microbial community changes due to phytoplankton addition
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70Soil bacterial diversity is associated with human population density in urban greenspaces
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61Microbial community structure is affected by cropping sequences and bio-covers under long-term no-tillage
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51Biological Impacts of Ocean Acidification
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46Temporal variation in pesticide biodegradation
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46Queensland Museum provider for OZCAM
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45Response of soil bacteria to anthropogenic soil variables at large spatial scales
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43Raw sequence reads from soil relic DNA study
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40Metabarcoding surveys of the Arctic marine environment
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37Bacterial 16S Ribosomal RNA RefSeq Targeted Loci Project
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34Soil microbial diversity in the Maintenance of Exotic vs. Native Diversity experiment (depth study)
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34Marine (Aarhus) and freshwater (Lake Constance) sediment Raw sequence reads
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33Saltern of Margherita di Savoia Metagenome
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29Microbial biogeography of 925 geothermal springs in New Zealand
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27Bacterial diversity and community composition in grassland and forest soils of the German Biodiversity Exploratories
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25Soil microbial distribution
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24Marine methane seep Targeted Locus (Loci)
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24Little Sippewissett Marsh Targeted Locus (Loci)
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23Bacterial 5S Ribosomal RNA RefSeq Targeted Loci Project
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23Bacterial 23S Ribosomal RNA RefSeq Targeted Loci Project
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23Coral
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22Soil bacterial communities (Hainich National Park)
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22Bacterial Biomarkers of Marcellus Shale Activity in Pennsylvania
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21Macroalgal Morphology affects composition and settlement of microbial communities
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20DEEPEND: Microbiome and bacterioplankton rRNA gene sequence data collected from Gulf of Mexico seawater samples. Cruises DP03 and DP04 from Jan 2016 - December 2016
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18EMOSE (2017) Inter-Comparison of Marine Plankton Metagenome Analysis Methods
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17Baltic Sea high-frequency temporal study 2012 at the Linnaeus Microbial Observatory Targeted Locus (Loci)
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15soil metagenome Raw sequence reads
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15Baselines Initiative 16S rRNA gene dataset: Baselines Amplicon Release 1 (R1) Indian Ocean 2015
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15Incubation of marine methane seep sediments with a bioorthogonal amino acid
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15Amplicon sequencing of Tara Oceans RNA samples corresponding to size fractions for protists.
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15Arctic first-year drift ice and under-ice water bacterial communities
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13Sea spray aerosols at Three California Beaches
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13It was verified the impact of irrigation treatments (wet, optimal, dry and very dry) and three potato cultivars on soil microbial community.
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12Microbial diversity in benthic stream sediment
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12Zooplankton communities in the coastal water of northeastern Hokkaido
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12Bacteria community in the southern East China Sea
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11Prokaryotic microbial communities structure in the headwater watchment of Dongjiang River in the south of China
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11Diet analysis of Japanese sardine and Pacific round herring larvae
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11Natural History Museum (London) Collection Specimens
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11Comparative 16S analysis of hydrothermal vent samples from the Mid-Atlantic Ridge (MAR)
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1116S rRNA sequences of bacterioplankton spatial distributions in the Baltic Proper
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10Queensland Marine Sediment
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10Marine metagenomes from the bioGEOTRACES project
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10marine metagenome Metagenome
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10Soil microbial response to organic disturbances
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10bacterial community in the deep-sea surface sediments
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9Herbicide-incubated GBR lagoon microbiomes Targeted loci environmental
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916S Amplicon Data from an Antarctic Cold Seep
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9Fluctuating redox regimes raw sequence reads
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9Shotgun Metagenome Sequencing of Lake Soyang
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9Coral-associated bacteria demonstrate phylosymbiosis and cophylogeny
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8Microbiome profiling Schlöppnerbrunnen peat cores from different depths
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8Metabarcoding Data from an Inventory of Freshwater Invertebrates from the Miller Creek Watershed, Kenai Peninsula, Alaska, USA
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8Zooplankton microbiome of the Amazon River Plume and western trophic North Atlantic
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8Eukaryotic diversity in Central Park
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8Bacteria exposure experiment North Sea
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7Baselines Initiative 16S rRNA gene dataset: Baselines Amplicon Release 1 (R1) Caribbean Sea near Curacao (including saline pond samples in Curacao) 2015
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7Bacterial diversity in snow from mid-latitude mountain areas: Alps, Eastern Anatolia, Karakoram and Himalaya.
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7ATCC Bacteria Collection Catalog
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7Impact of rainforest transformation on phylogenetic and functional diversity of soil prokaryotic communities in Sumatra (Indonesia)
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6MeHg Coal Ash
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6Natural seawater bacterial community in exopolysaccharides utilization
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6Transplant and re-transplant microcosms of Baltic Proper and Bothnian Sea bacterioplankton Targeted Locus (Loci)
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6Effect of genetics and environment on gut bacteria in Anopheles and Aedes mosquitoes.
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6CEFS_16S_ITS
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5Bacterial 16s Amplicon Sequencing of the Atlantic Ocean
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5Lake sediment sequencing
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5Temporal sampling of marine metagenomes from Station ALOHA and BATS
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5Eastern offshore environmental monitoring of Krishna Godavari Basin Bay of Bengal 2013-2016, Funded by: ONGC India
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5the under-explored coal gangue and the adjacent acid mine drainage creek soil Raw sequence reads
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516S rRNA amplicon sequences of Baltic Sea bacterioplankton
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5North Sea plastic incubation and reference communities, raw sequence reads
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5Non-target effects of Metarhizium brunneum on soil microbial communities
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5Variation in freshwater stream sediment community 16S rRNA profiles along an urbanization gradient
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5Sediment Metagenome Raw sequence reads
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5Bacterial communities in agricultural soils under contrasting agronomic managements and biomes of Argentina
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4Effects of Fecal Input, Environmental Conditions, and Environmental Sources on Enterococci Concentrations in an Estuarine Ecosystem
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4Coastal Sediment Bacterial Community Alterations in Association with Sudden Vegetation Dieback
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4Soil Microbial communities from weed germination bioassay targeted loci environmental
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4Bacterial 16S rRNA gene sequencing of Antarctic soil
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4Groundwater microbiome
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4Microbial biogeography of French caves
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4FBIP: Survey of invertebrate and microbial diversity of the Prince Edward Islands system
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4Ice Wedge Polygon
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4Santa Monica Basin seep sediment incubations to assess C and N sources for F430 synthesis
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4Microbial diversity of marine sediments
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4Abundance, diversity and distribution of Legionellales in wet environments in Sweden
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416S data describing Antarctic benthic sediment
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3Tucurui_Metagenoma_MGRAST
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3Rifle sediment bacterial community Targeted Locus (Loci)
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3Marine Water Column Samples Targeted loci environmental
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3A practical introduction to microbial molecular ecology through the use of iChips
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3This workpackage details only the prokaryote (Archaea and Bacteria) analyses for the MicroPolar project.
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3Bacterial Diversity in the East China Sea
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3Depth profile of ancient sediments
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3the assembly of abundant and rare bacterioplankton subcommunities in three subtropical bays
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3DSMZ Prokarya Collection Catalogue
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3Sediment of acid mine drainage Targeted loci environmental
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3Temporal effect of plant diversity and oiling on nitrogen cycling in marsh sediments
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3anchialine metagenome Raw sequence reads
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3Composition and Genetic Diversity of Microbial Communities in Subtropical Coastal Wetland Sediments
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3estuary metagenome Raw sequence reads
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3Antarctic Snow Algae 2014/15 16S and 18S Illumina Seq of snow algae communities around Ryder Bay, Antarctica
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3Marine metagenome Targeted loci environmental
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3Bacteria in Anopheles darlingi breeding sites in Manaus, the Amazon, Brazil
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2Reciprocal transplantation experiment of salt marsh sediments Targeted loci
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2Planktonic bacterial communities in the arctic Canada Basin and Kongsfjorden
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2Antarctic Hypersaline Brine Raw sequence reads
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2marine methane seep Targeted Locus (Loci)
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2Bacterial communities from Thrombolites of Lake Sarmiento
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2Microbial community of Red Sea (16S amplicon) Targeted Locus (Loci)
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2solar evaporation pond sample Metagenome
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2SCHEMA_Sediment
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2Assessing the microbial diversity in Cape Comorin ocean water
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2Sea ice and seawater Raw sequence reads
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2BSM marine Targeted Locus
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216S rRNA metagenomic investigation of arsenotrophic bacteriome of ground water and soil from arsenic-prone area of Bangladesh
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2Microbial diversity before and after tidal re-instatement
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2Seawater metagenome Targeted loci environmental
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2Methanogens and iron-reducing bacteria are major contributors to mercury methylation in boreal lake sediments
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2Nutrient addition mesocosm experiment Targeted Locus (Loci)
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2Marine Sediment from the Berkeley Bay Targeted Locus (Loci)
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2Assessing the effects of salmon farming seabed enrichment using bacterial community diversity and high throughput sequencing
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2Impact of a major inflow event on the composition and distribution of bacterioplankton communities in the Baltic Sea
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2Northern Gulf of Mexico Hypoxic Zone Raw sequence reads
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2Camargue soil and sediment 16S community profiling
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2Diversity of bacterioneuston and bacterioplankton in coastal waters of Misaki, Japan
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2Bermuda Atlantic Time-series Study metagenomes
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2Polymetallic nodule field Targeted loci environmental
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2The Indigo Project: a global citizen science Ocean survey
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2Seasonal and spatial diversity of bacterial communities in marine sediments of Ningbo Xiangshan Coastal Ocean
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2Metagenomics of Jacarepagua Lagoon
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2There are 3 zooplankton samples from 3 different ponds, we collected sample and use the fresh samples to do DNA extraction directly, then mix them with adjustment guided by the number of species within each of them. At last, use Hiseq-2599 PE-150 to do NGS work
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2Prokaryotic community response to microalgal lysates
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2Microbial community response on waste water discharge in recipient freshwater sediments
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1Thermophilic endospores in temperate sediments
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1DOW-2
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1MiSeq 16S rRNA gene (prokaryotic 16S rRNA gene) sequences of 33 Mai Po sediments, including 18 samples from winter and 15 samples from summer
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1Metagenome microbial communities of bottom sediments of the Kara Sea
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1Marine sediment Raw sequence reads
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1marine sediment metagenome Metagenome
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1marine sediment metagenome Targeted loci environmental
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1Sediment bacterial 16S in Hachiro polder.
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1Pelagic Microbiome: viruses to protists. 16S and 18S data from oceanic samples collected at the chlorophyll maximum.
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1Zostera Marina Ammonification environmental
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1ETNP Targeted Locus (Loci)
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1Metagenome from mudbank Area,Alappuzha Kerala India
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1Po river Prodelta and Mar Piccolo of Taranto surface sediments bacterial communities targeted loci
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1Antimony contaminated sediments Raw sequence reads
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1Species-specific associations between bacterioplankton and photosynthetic picoeukaryotes
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1Marine bacteria Targeted Locus (Loci)
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1microbial communities in long-term e-waste contaminated river sediments
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1rDNA amplicon sequencing of Western North Atlantic microbial community
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1seawater metagenome Metagenome
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1Genetic potential for pentachlorophenol degradation at historically contaminated groundwater sites
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1Microbial communities in the ocean Raw sequence reads
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1Bacterial community profiles in a bioreduced uranium contaminated site after reoxidation
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1Mariana and Kermadec Trench sediment 16S rRNA gene sequencing
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1Chandeleur Island 2016 Amplicon Study Raw sequence reads
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1NEW-1
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1iNaturalist Research-grade Observations
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1Cryoconite sediments Targeted Locus (Loci)
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1Lonar sediment Raw sequence reads
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1marine metagenome
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1Archaea
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1rRNA, rDNA bacteria thaw ponds Targeted loci environmental
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1sediment metagenome Metagenome
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1Red Sea microbial plankton Raw sequence reads
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1Arctic microbiome along Svalbard Cross Shelf transects
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1Patagonian fjord prokaryote community
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1Microbial Diversity in the Southwest Atlantic Ocean and Patagonian Freshwater Bodies
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1XRCWD sediment metagenome Metagenome
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1NMNH Extant Specimen Records (USNM, US)
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1Sea water sample Targeted Locus (Loci)
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1Distinctive Microbial Community Structure in Highly Stratified Deep-Sea Brine Water Columns
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1Fe3+ and Mn4+ - induced changes in microbial communities of boreal lake sediments
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1DSMZ Bacteria
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116S rDNA amplicon of Bacteria and Archaea Metagenome
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1NEW-2
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116S rRNA genes Random survey
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1marine sediment metagenome Raw sequence reads
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1Characteristics of bacterial communities in the deep sediment Lake Baikal from the regions with oil and gases discharging
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1Bacterias y Arqueas de la transición Andino-Amazónica del departamento del Caquetá - Proyecto Colombia BIO
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1Spatially differing bacterial communities in water columns of the northern Baltic Sea
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1California Current System Long Term Ecological Research P1604 (CCS_LTER_P1604) Targeted loci environmental
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1Marine sediment metagenome
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1Eukaryote diversity assessment of sediments of the Western English Channel
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1Microbial communities in marine surface water
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1Bacteria in domestic water-storage containers with or without mosquito larvae
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116S data from: Diversity of Pico- to Mesoplankton along the 2000 km Salinity Gradient of the Baltic Sea (Hu et al. 2016)
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1PREsediment Targeted Locus (Loci)
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1marine metagenome Targeted Locus (Loci)
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1INVESTIGATING THE MICROBIAL EUKARYOTIC COMMUNITIES IN THE SURFACE WATERS OF THE ARAFURA SEA AND CORAL SEA
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1De novo whole metagenome sequencing studies
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1Diversities of bacteria and archaea in Sanya mangrove sediments
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1Evaluation of filtration and DNA extraction methods for environmental DNA biodiversity assessments across multiple trophic levels.
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1Marine Bacteria 16S V4 Raw sequence reads
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1A long-standing complex tropical dipole shapes marine microbial biogeography
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1magnetite Targeted Locus (Loci)
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1Ghent University - Zoology Museum - Insect collection
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1Benthic Ocean Acidification
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1Enhanced pyrene and benzo[a]pyrene degradation by plant root and SMFC
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1Bibliographie de la faune, la flore et la fonge de France métropolitaine et outre-mer - Bibliographique de la faune, la flore et la fonge de France métropolitaine et outre-mer
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1environmental sample sequencing
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1sediment metagenome Raw sequence reads
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1Bacterial communities from the water column and the surface sediments along a transect in the East Sea (Sea of Japan)
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1soil bacteria and fungi Targeted loci environmental
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1Microbial indicators of anthropogenic marine pollution identified by 16S and 18S metagenomic library analysis
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1Shotgun metagenomic analysis of Lake Paajarvi sediment microbes.
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1Caspian Sea Sediment - 16S Survey Targeted Locus (Loci)
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1Coastal seawater influenced by the municipal effluents Raw sequence reads
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1Microbial diversity
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1Biological rejuvenation of iron oxides in bioturbated marine sediments
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1Microbial diversity associated with copepods in the North Atlantic subtropical gyre
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1Variations in prokaryotic community assembly and predicted metabolic potential of surface sediments with geography in the coastal northern Zhejiang, East China Sea