Collections of Phytoplankton at Herbarium Berolinense, Berlin (B)

NMNH Extant Specimen Records

Marine metagenomes Metagenome

Grethe Hasle Diatom Collection

Nahant Collection

Amplicon sequencing of Tara Oceans DNA samples corresponding to size fractions for protists.

MICROBIS database

Phytoplankton from the White Sea, Barents Sea, Norwegian Sea and Arctic Basin 1993-2003

Arctic Ocean Diversity

UPCB - Herbário do Departamento de Botânica

Artportalen (Swedish Species Observation System)

Benthos, zoo- and phytoplancton data collected during the monitoring cruise of RV "Vladimir Parshin" in 1996.

anchialine metagenome Raw sequence reads

EMOSE (2017) Inter-Comparison of Marine Plankton Metagenome Analysis Methods

Eukaryotic diversity in Central Park

Marine metagenomes from the bioGEOTRACES project

Nutrient addition mesocosm experiment Targeted Locus (Loci)

SOLA Raw sequence reads

Development and validation of a multi-trophic metabarcoding biotic index for benthic organic enrichment biomonitoring using a salmon farm case-study.

Sediment Metagenome Raw sequence reads

“Phytoplankton and Zooplankton data collected during the Black Sea cruises of UkrSCES R/V "Georgyi Ushakov" in 1992”

Marine Water Column Samples Targeted loci environmental

Plant niche rather than soil or species shapes the microbiota

Zooplankton communities in the coastal water of northeastern Hokkaido

16S Amplicon Data from an Antarctic Cold Seep

Temporal sampling of marine metagenomes from Station ALOHA and BATS

Macroalgal Morphology affects composition and settlement of microbial communities

Red Sea microbial plankton Raw sequence reads

Marine invertebrate collection NTNU University Museum

Protist Diversity in the East China Sea

Naturalis Biodiversity Center (NL) - Micropaleontology

marine sediment metagenome Metagenome

California Current Cruise CCE-P1408 Process Cruise #6

Diet analysis of Japanese sardine and Pacific round herring larvae

Extracellular DNA marine sediment Targeted Locus (Loci)

Temporal variation in pesticide biodegradation

Protists community in the southern East China Sea

Effect of size fractionation and DNA extraction on the diversity and composition of prokaryotic and eukaryotic plankton community

Exploring Fronts With Multiple Robots Schmidt Ocean Institute Cruise to the Pacific Ocean in 2018

CARBOM cruise 2013 flow cytometry sorted phytoplankton

Red Sea Zooplankton Raw sequence reads

uncultured prokaryote Targeted loci environmental

Water and Sediment samples Targeted loci environmental

Uncultured eukaryotes Targeted Locus (Loci)

Hydrate Ridge, OR - Deep sea cold seep ecosystem Targeted Locus (Loci)

INVESTIGATING THE MICROBIAL EUKARYOTIC COMMUNITIES IN THE SURFACE WATERS OF THE ARAFURA SEA AND CORAL SEA

Bacterial 16s Amplicon Sequencing of the Atlantic Ocean

Paleobiology Database

River Macrophytes Database

ADDOMEx Tier 3 Experiments: Mesocosm Si with Gulf of Mexico coastal waters

North Sea plastic incubation and reference communities, raw sequence reads

sediment metagenome Raw sequence reads

Arctic microbiome along Svalbard Cross Shelf transects

Polymetallic nodule field Targeted loci environmental

Coral-associated bacteria demonstrate phylosymbiosis and cophylogeny

Amundsen Gulf Overwintering Eukaryote Community

Microbial communities in the ocean Raw sequence reads

Environmental zooplankton Targeted Locus (Loci)

ARMS Jeddah sample Raw sequence reads

Pelagic Microbiome: viruses to protists. 16S and 18S data from oceanic samples collected at the chlorophyll maximum.

Biological rejuvenation of iron oxides in bioturbated marine sediments

Eukaryotic natural population from Northern Baffin Bay - Raw sequence reads

Eucaryotic microbial communities structure in the headwater watchment of Dongjiang River in the south of China

Coral

16S rDNA amplicon of Bacteria and Archaea Metagenome

Nitrate-storing microorganisms in sediments of the Bornholm Basin

Southern Ocean microorganisms Targeted Locus (Loci)

SAR amplicon from community incubated with various nanophytoplankton in microcosm

“Phytoplankton and Zooplankton data collected during the Black Sea cruises of UkrSCES R/V "Ernst Krenkel" in 1992”

ECOPOT_2: Phytoplankton in Flemish waterbodies

Successional trajectories of coastal bacterioplankton communities in response to co-exposure of cadmium and phenanthrene

Bernice P. Bishop Museum

Metagenomic community analysis of marine zooplankton using two plankton nets

Sea spray aerosols at Three California Beaches

Microbial communities associated with Eurasian watermilfoil, water and sediment

Metagenome analysis of picoeukaryotes from surface seawater

Diet analysis of Pacific Bluefin Tuna larvae

Microbial Processes and Biodiversity: OCEAN

Microbial eukaryotes

Marine sediment metagenome raw sequence reads

Little Sippewissett Marsh Targeted Locus (Loci)

Amplicon sequencing of Tara Oceans RNA samples corresponding to size fractions for protists.

Herbicide-incubated GBR lagoon microbiomes Targeted loci environmental

KiEco Freshwater Ecology: River Macrophytes

Microbial communities in the phycosphere environment

Community structure of Archaea in the western North Pacific and the Arctic Ocean

Temporal dynamics of eukaryotic microbial diversity at a coastal Pacific site

marine metagenome Raw sequence reads

Surface ocean Targeted Locus (Loci)

A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes

White sea picoplankton Metagenome

Comparative study in validity of three regions of 18S-rRNA for eukaryote amplicon sequence analyses

Whale fall

Sea ice and seawater Raw sequence reads

Marine metagenome ICM_JRV

Lund Botanical Museum (LD)

Soil marker gene sequences across the Nutrient Network

sediment metagenome Raw sequence reads

Marine metagenome ICM_GPS

uncultured marine eukaryote Targeted loci environmental

uncultured marine picoeukaryote strain:Peuk_V4_NWP1 Raw sequence reads

Bermuda Atlantic Time-series Study metagenomes

uncultured marine picoeukaryote strain:Peuk_V4_NWP2 Raw sequence reads

Bacteria community in the southern East China Sea

Submarine Ligurian Canyons Water Prokaryotic and Protist Communities

Metabarcoding surveys of the Arctic marine environment

Marine eukaryotes Targeted loci environmental

Sediment of acid mine drainage Targeted loci environmental

Magdalen Island Spatio Temporal (MIST) Raw sequence reads

16S data describing Antarctic benthic sediment

Fungal diversity in Sanya mangrove sediments, China

Queensland Marine Sediment

Short-term interaction of pyrene and cadmium in prokaryotic community in coastal sediment microcosms

blocking PCR amplification of metazoan DNA for protistan diversity

Heterogeneity of methane seep microbiomes in the NE Pacific

Structure and function of picoplankton and virus communities along zonal gradients in the South Pacific Ocean

Sediment Microcosm Metagenome

marine metagenome Raw sequence reads

Microbial diversity in the Benguela coastal upwelling system as derived from 16S rRNA sequencing and RNA Stable Isotope Probing (SIP)

Oxygen minimal zone Targeted loci environmental

Diversity of Microbial Eukaryotes in Sea Waters From Fildes Peninsula,King George Island, Antarctica

Impacts of crude oil and chemical dispersant exposure on marine microbial biofilm formation and steel corrosion

Marine metagenome ICM_WBS

Soil metagenome from healthy and unhealthy agricultural soil

Protists in Havre-aux-Maisons Lagoon, Magdalen Islands, Quebec, Canada

Equatorial Pacific Ocean Targeted loci environmental

Abundance, diversity and distribution of Legionellales in wet environments in Sweden

Microbial community structure and dynamics in the oxygen minimum zone of the Northeast subarctic Pacific Ocean

The Indigo Project: a global citizen science Ocean survey

Structuring effect of environmental variables on protistan diversity patterns in two anoxic marine basins

Seawater metagenome Targeted loci environmental

Municipal Pensacola Beach Sand Metagenome

Gulf of Mexico open ocean Targeted Locus (Loci)

16S and 18S sequences from the epiphytic biofilm on leaves of Enhalus acroides

Metagenome data from DNA stable isotope probing of Stiffkey saltmarsh sediment microcosms to investigate methanogenesis from choline

Magadalen Islands Spatio Temporal (MIST) Large Fraction

Green Edge microcosms Raw sequence reads

Metagenomic investigation of six depths from the anchialine Bundera sinkhole

Marine sediment metagenome ICM_DSE

Marine protists Metagenome

Diversity of microbial community (bacteria, micro-eukaryotes and fungi) in the Passage of Lascaux Cave.

Metagenomic approach for studying picoeukaryotes in a extreme oligotrophic marginal sea (South Adriatic Sea) during winter mixed conditions

Eukaryotic protists Metagenome

Diversity of SE Pacific benthic Bacteria and Archaea communities Targeted Locus (Loci)

Microbial eukaryote Metagenome

Mariana and Kermadec Trench sediment 16S rRNA gene sequencing

Coastal Marine Environment Targeted loci environmental

Shotgun Metagenomic Sequencing of the Arctic Ocean during Winter-Spring Transition

Protists tag sequencing of 18S rRNA HV 9

Saltern of Margherita di Savoia Metagenome

ADDOMEx

Global Ocean Sampling Expedition

Soil microbial diversity in the Maintenance of Exotic vs. Native Diversity experiment (depth study)

Geographically tagged INSDC sequences

Microbial indicators of anthropogenic marine pollution identified by 16S and 18S metagenomic library analysis

Shotgun metagenomic analysis of Lake Paajarvi sediment microbes.

seawater metagenome Metagenome

uncultured eukaryote Raw sequence reads

Amplicon-Based Illumina Sequencing Reveals High Diversity of Phytoplankton in the Coastal Waters of Qinhuangdao

Microbial diversity in shallow water hydrothermal sediments of Gueishan Island, Taiwan

Marine fungi Raw sequence reads

The Nanoeukaryotic plankton Raw sequence reads

Phaeobacter inhibens host-attached and free-living communities

sea water Picoeukaryotic Community Raw sequence reads Raw sequence reads

VAG Mine Pit Pond Metagenome

Natural History Museum (London) Collection Specimens

Metagenetic analysis of the 18S nuclear small subunit ribosomal RNA gene of a mixed zooplankton assemblage was carried out using the 454 pyrosequencing platform.

Gulf Oil Spill underwater oil plume samples Targeted Locus (Loci)

Shotgun Metagenome Sequencing of Lake Soyang

Botany (UPS)

Marine sediment microbial communities in the presence of macrophytes

Microbial Community Diversity Response to a Changing Arctic Ocean

Northern Gulf of Mexico Hypoxia can Alter Sediment Communities of Nitrifying Archaea

Microbial community diversity in Arctic marine sediments and Planktonic microbial

Indian_sediments

Microbial community structure of chronically polluted marine sediments from a cold region of the southern hemisphere

ARK26/3_Station212 Targeted Locus (Loci)

Microbial communities in estuarine sediments

Marine sample from an Antarctic Bay Raw sequence reads

Environmental eukaryotes Metagenome

Metazoan sequencing

Tucurui_Metagenoma_MGRAST

Temperature shifts simulating secondary oil recovery

Spirulina necromass degradartion in arctic marine sediments

Pelagic sediment metagenome of Gulf of Kutch

Protistan plankton diversity along salt gradient

Antarctic Snow Algae 2014/15 16S and 18S Illumina Seq of snow algae communities around Ryder Bay, Antarctica

Pelagic sediment metagenome of Gulf of Khambhat

Marine metagenome ICM_LCR

Characteristics of eukaryotic plankton community in the Coastal Waters of Rongcheng by Illumina sequencing

Geotraces Raw sequence reads

Preservation of ancient eukaryotic DNA in methane hydrate-associated marine sediments.

envinronment Metagenome

Microbial eukaryotes in an Arctic under-ice spring bloom north of Svalbard.

Microbial communities associated with Juncus roemerianus and Spartina alterniflora vegetated sediments in Louisiana saltmarshes

Microbial eukaryotes present in a Norwegian coastal ecosystem and in the gut content of Calanus copepods from Raunefjorden

sediment metagenome Metagenome

sediment metagenome Metagenome

uncultured prokaryote Targeted loci environmental

Microbial ecology of archaeal community in sediment from adjacent waters of Rushan Bay

microbial diversity Raw sequence reads

Peruvian eddy shotgun metagenomes

marine metagenome Targeted Locus (Loci)

Microbial eukaryote 454 Roche sequencing in estuarine ecosystems

Composition and genetic diversity of picoeukaryotes in subtropical coastal waters as revealed by 454 sequencing-by-synthesis

Metagenomics of Brava and Tebenquiche lakes microbial mats

microbial community diversities of Tuosu Lake

Arctic benthos Targeted Locus (Loci)

Active microbial eukaryotes amidst a marine subsurface RNA paleome

Comparison of marine sediments from the Beguela upwelling zone

Meiobenthos nSSU metagenetic meiobenthic data

Saltern microbial community diversity

Microbial biogeography of French caves

Global phylogeography survey of thermophilic spores in marine sediments.

marine metagenome Raw sequence reads

Plankton sample collected from Nanaimo Harbour Targeted Locus (Loci)

Diversity and population structure of Marine Group A in the oxygen minimum zone of the Northeast subarctic Pacific Ocean

Marine Sediment from the Berkeley Bay Targeted Locus (Loci)

Assessing the effects of salmon farming seabed enrichment using bacterial community diversity and high throughput sequencing

De novo whole metagenome sequencing studies

Evaluation of filtration and DNA extraction methods for environmental DNA biodiversity assessments across multiple trophic levels.

A long-standing complex tropical dipole shapes marine microbial biogeography

Sundarbans estuarine ecosystem Metagenome

Suffolk Biodiversity Information Service (SBIS) Dataset

Nuunat- ORMS formation during oil biodegradation at low temperature

Metagenomic investigation of the coastal region of south Gujarat using soil sample - Nargol, Umargam and Dandi

Microbial eukaryotes Metagenome

Ocean sediment-basement interface Targeted Locus (Loci)

Marine metagenome ICM_AWP

water sample Raw sequence reads

Composición del fitoplancton de la Isla Cayo Serranilla durante la Expedición Seaflower 2017 - Proyecto Colombia BIO

ocean bacteria Metagenomic assembly

ETNP Targeted Locus (Loci)

Microbial eukaryote community structure during early phytoplankton blooms in the naturally iron-fertilized Kerguelen area (Southern Ocean) Targeted Locus (Loci)

rDNA amplicon sequencing of Western North Atlantic microbial community

Cascading influence of inorganic nitrogen sources on DOM production composition lability and microbial community structure in the open ocean

Marine metagenome ICM_DOF

NEW-1

Microbiome profiling Schlöppnerbrunnen peat cores from different depths

DSW-2

Marine subseafloor sediment Targeted Locus (Loci)

Swan lake bacteria Raw sequence reads

Analysis of plasmidome of high-altitude lakes from the Andean Puna

SCHEMA_Sediment

Arctic sea-ice and sub-ice seawater raw sequence reads

Marine phytoplankton Metagenome

Assessing the microbial diversity in Cape Comorin ocean water

Diatom Community Composition CCS Diel

Uncultured marine eukaryotes Targeted Locus (Loci)

marine metagenome Metagenome

Arctic Ocean

Canada Basin Metagenome

Fringing reef Metagenome

NEW-2

California Current System Long Term Ecological Research P1604 (CCS_LTER_P1604) Targeted loci environmental

Eukaryote diversity assessment of sediments of the Western English Channel

USS-2

University of California Santa Barbara Algae Collection

Natural Resources Wales Regional Data : Mid-Wales

Archaea 16S 01-13 Genome sequencing and assembly

Marine sediment Raw sequence reads

marine sediment Raw sequence reads

Marine microbial eukaryote community analysis in Korea

Life in a toxic environment

Marine sediment metagenome ICM_FIS

Protistan communities of the upper Arctic Ocean (18S SSU-rRNA Targeted Locus)

Depth dependent (0-5,000 m) and seasonal variability in archaeal community structure in the subarctic and subtropical western North Pacific.

There are 3 zooplankton samples from 3 different ponds, we collected sample and use the fresh samples to do DNA extraction directly, then mix them with adjustment guided by the number of species within each of them. At last, use Hiseq-2599 PE-150 to do NGS work

Arabian sea sediment samples with protist reads Metagenome

16s data marine community of L4 station

18S-V4 amplification of dinoflagellate cyst communities in the South China Sea

marine sediment metagenome Targeted Locus (Loci)

Uncultured eukaryote community Targeted loci environmental

Thermophilic endospores in temperate sediments

DOW-2

Coral metagenome ICM_CCB

DEEPEND: Microbiome and bacterioplankton rRNA gene sequence data collected from Gulf of Mexico seawater samples. Cruises DP03 and DP04 from Jan 2016 - December 2016

Metagenome microbial communities of bottom sediments of the Kara Sea

marine plankton metagenome Raw sequence reads

Socompa Lake Stromatolite Shotgun Metagenomic Sequencing

Ascidian and Seawater Metagenome

deep marine subsurface Raw sequence reads

Ocean crust Targeted Locus (Loci)

Svalbard Targeted Locus (Loci)

Effects of triclosan on bacterial community composition in natural seawater microcosms

Duke University Herbarium Algae Collection

Microbial community in marine sediments

Antarctic Hypersaline Brine Raw sequence reads

Comparative metagenome analysis of normal and arsenic contaminated soils from ballia district, Uttar Pradesh, India

Microbial diversity of Oslo Fjord Pockmark sediments

Active picoeukaryotes in the Eastern Mediterranean Sea

Diversity, Ecology and Biogeochemistry of cyst-forming acantharia (Radiolaria) in the oceans

Foraminifera 18S rDNA and rRNA diversity for fish farms biomonitoring

Microbial diversity in the Tongyeong-Geoje coastal area of Korea2

Lake sediment sequencing

Marine methane seep Targeted Locus (Loci)

marine sediment metagenome Raw sequence reads

Marine sediment metagenome ICM_CFU

This workpackage details only the prokaryote (Archaea and Bacteria) analyses for the MicroPolar project.

rRNA, rDNA bacteria thaw ponds Targeted loci environmental

Nanticoke Harbour, ON, Canada (plankton SSU 454 sequencing)

Raw sequence reads from soil relic DNA study

Uncultered bacterium Targeted Locus (Loci)

Microbial populations of Lascaux's Apse in relation to collembola and black stains on cave walls.

Survey and monitoring records for Scottish Wildlife Trust reserves from reserve convenors and Trust volunteers - Unassessed data

DOS-1

Temporal dynamics of the particle-attached and free-living microbial communities from coastal seawater

Marine sediment metagenome ICM_CRS

Environmental Foraminifera Raw sequence reads

Microbial diversity and skin mucosal microbiota in farmed Atlantic salmon with ulcerative disorders, raw sequence reads

Metagenomics of Ojo de Campo

Characteristics of bacterial communities in the deep sediment Lake Baikal from the regions with oil and gases discharging

Bacterial communities in sandy sediment at submarine volcanic vents off Panarea Island (Italy)

Marine sediment metagenome

Bacteria Metagenome

How much do we know about marine metazoan biodiversity? Recent disclosures using second generation sequencing.

Norwegian Species Observation Service

Taxonomic composition of microbial communities in coastal Arctic sediments

Marine metagenome ICM_ABR

Prince Edward Island marine metgenome Raw sequence reads

Sediment microbial community Random survey

Benthic Ocean Acidification

Enhanced pyrene and benzo[a]pyrene degradation by plant root and SMFC

Prokaryotic community response to microalgal lysates

1)sediments; 2) coral floc Metagenome

soil bacteria and fungi Targeted loci environmental

Distributions and Abundances of Sublineages of the N2-Fixing Cyanobacterium Candidatus Atelocyanobacterium thalassa (UCYN-A) in the Noumea Lagoon

Microeukaryotes in metagenomic survey of ancient Siberian permafrost

Vertical stratification of microbial communities in the Red Sea revealed by 16S rDNA pyrosequencing

marine sediment metagenome Raw sequence reads

Narragansett Bay, RI Sediments Targeted Locus (Loci)

Marine bacterial, archaeal and eukaryotic diversity and community structure on the continental shelf of the Western Antarctic Peninsula

16S rRNA Analysis of Osaka Bay Microbiomes