Flora Mycologica Iberica Project database

Francisco Pando

doi:10.15468/sssx1e

Flora Mycologica Iberica Project database

Citation

Pando F (2021). Flora Mycologica Iberica Project database. Real Jardín Botánico (CSIC). Occurrence dataset https://doi.org/10.15468/sssx1e accessed via GBIF.org on 2024-12-12.

Description

The database contains detailed distribution information on several fungus groups species. The information has been revised, and in many time compiled, by expert mycologist(s) working on the monographs for the Flora Mycologica Iberica Project (FMI). Records comprise both collection and observational data, obtained from a variety of sources including field work, herbaria, and literature. The database contains 54,138 records, of which 20,813 are georeferenced. These correspond to 2445 species, grouped in 18 classes. The geographical scope of the dataset is Iberian Peninsula (Continental Portugal and Spain) and Balearic Islands. The complete dataset is provided in Darwin Core Archive format.

The " Flora Mycologica Iberica Project database" is one of the main results produce by the "Flora Mycologica, a research project that stood from 1996 to 2008 and involved over 30 researchers . It provides information on 2,445 fungus species recorded from The Iberian Peninsula and Balearic Islands. As an online resource, it is a valuable service, with a high reuse potential, based on its coverage, taxonomic scrutiny --carried out by taxonomic experts in the different groups-- and validation processes of the associate information (location, habitat). The other major outcome of the project were the monographs of the covered groups: Aphyllophorales [p.p.](Telleria Melo, 1995), Myxomycetes [p.p.] (Lado & Pando, 1997), Gasteromycetes [p.p.] (Calonge, 1998), Laboulbeniales (Santamaria, 1998, 2003) and Dictiosporic Dothideales (Checa, 2004).These provides description, illustrations, identification keys and additional infomation on the species and taxa included in this database.

Purpose

This dataset was conceived within the Flora Mycologica Iberica Project (FMI) to serve two purposes: 1. To gather the available information on Iberian fungi as published on the scientific literature, to establish a baseline knowledge for the project and provide basic information upon which to elaborate the project's monographs, among other purposes. 2. To incorporate the primary data produced and compiled during the project to the previously available information, and thus providing updated and validated data on Iberian fungi. These data were gathered or verified by professional researches, many of whom also authored the project's monographs (see under References). Primary data added in this way mostly came from studied herbarium specimens and field campaigns. Targeted field surveys on sites poorly known and of ecological or conservation relevance were carried out within the framework of the project. The primary data were also made available as publication in the "Cuadernos de Trabajo de Flora Micologica" series (see References).

Sampling Description

Study Extent

The main source for the study was the literature collation and herbarium revision for data on the selected fungal groups in the Iberian Peninsula and Balearic Island. The information was complemented by targeted field campaigns on sites poorly known and of ecological or conservation relevance.

Sampling

These two data avenues are subjected to different methodologies. Data collation from literature references. Three procedures are defined in this area: 1) To Identify and obtain relevant publications. A set of explicit criteria to determine whether a publication was or not eligible to be included into the database was defined. These were published by Pando (1991:11-13). The library of the Real Jardín Botánico-CSIC was the main source for literature. When an eligible publication was identified and not found in this library a copy was obtained by the usual procedures (library exchange, colleagues, etc) and deposited in that library. 2) Treated genus data entry. Genus names were extracted in a systematic way from the publications and entered into the database. Publications and genus names compiled until 1995 were published in three volumes of the "Cuadernos de Trabajo" series (Pando et al. 1990; Cardoso & Melo, 1992; Pando, 1996). At this point, the database contained data from c. 5,000 publications, at the end of the project this gathered data pertaining to c. 10,000 publications. 3) Occurrence data entry Although different approaches were explored at the beginning of the project, a procedure in which occurrence records were entered targeting specific taxonomic groups --on the basis of the project's priorities and the schedule for the publication of the monographs was soon consolidated. An effort was made to record all information associated to each occurrence, following an established schema, as described by Pando (1991). These works were mostly carried out by a small team of data entry technicians and supervisors, with the support of the Project's scientific team. Primary data produced and compiled as part of the research conducted within the project, by researches with the project, were also incorporated into the database. These come from studied specimens held in herbaria or fields surveys carried out within the framework of the project. These data were in many cases published as the "Bases Corológicas series in "Cuadernos de Trabajo" (See References).

Quality Control

Quality control and assurance comprises a number of procedures, references and tools along the data life cycle. These can be summarized as follows: A Data-entry manual on what to capture and what not and how to capture the information was developed and published (Pando, 1991). International standards approved or endorsed by the "Biodiversity Information Standards/TDWG). Specifically the following were used: Brummitt & Powell (1992), Lawrence & al. (1968), and TL-2 (Stafleu & Cowan (1976-1987; Stafleu & Mennega, 1993-2000; Dorr & Nicolson, 2008, 2009 ). Additionally, the following works were use a reference for taxonomic names: Farr& al. (1979, 1986), and the Dictionary of the Fungi (Hawksworth & al. 1983, 1995; Kirk & al. 2001, 2008), Saccardo (1882-1972) The database management system used (Pando & al., 2004), had many of these standards build-in as dictionaries and controlled vocabularies. All newly entered records were checked against the actual publications by the supervisors as part of the database work flow. A final check was done by the "Bases Corológicas" authors and editors as part of the publication process. Dataset publication in the GBIF network include data transformation to comply with the Darwin Core specification (Wieczorek & al., 2012) and further validation procedures (geographic coordinate format, coordinates within country/provincial boundaries, absence of ASCII anomalous characters in the dataset) using DARWIN_TEST (v3.3) software (Ortega-Maqueda & Pando 2008).

Method steps

N/A

Taxonomic Coverages

Dataset comprising distribution records of fungus species belonging to selected groups (Agaricomycetes, Dothideomycetes, Mycetozoa, Laboulbeniomycetes, Ustilaginomycetes and Acuatic hyphomycetes) found in the Iberian Peninsula and Balearic Islands (Western Europe). Sources included literature, herbaria and field surveys.

Agaricales
rank: order
Boletales
rank: order
Dothideales
rank: order
Cantharellales
rank: order
Corticiales
rank: order
Gomphales
rank: order
Hymenochaetales
rank: order
Laboulbeniales
rank: order
Phallales
rank: order
Polyporales
rank: order
Russulales
rank: order
Thelephorales
rank: order
Ustilaginales
rank: order
Echinosteliales
rank: order
Physarales
rank: order
Trichiales
rank: order
Stemonitales
rank: order
Agaricomycetes
rank: class
Dothideomycetes
rank: class
Myxomycetes (Mycetozoa, Protozoa)
rank: class
Laboulbeniomycetes
rank: class
Ustilaginomycetes
rank: class
Acuatic hyphomycetes (informal group)
rank: class
Atractiellomycetes
rank: class
Classiculomycetes
rank: class
Dacrymycetes
rank: class
Eurotiomycetes
rank: class
Exobasidiomycetes
rank: class
Leotiomycetes
rank: class
Microbotryomycetes
rank: class
Orbiliomycetes
rank: class
Pezizomycetes
rank: class
Protosteliomycetes
rank: class
Pucciniomycetes
rank: class
Sordariomycetes
rank: class
Tremellomycetes
rank: class

Geographic Coverages

Iberian Peninsula, Balearic Islands, South-Western Europe

Bibliographic Citations

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CALONGE, F.D (1998). Gasteromycetes I. Lycoperdales, Nidulariales, Phallales, Sclerodermatales, Tulostomatales. Flora Mycologica Iberica. Vol. 3. 272 pp -
CARDOSO. J. & I. MELO (1992). lnformacio bibliográfica II. Portugal. Cuad. Trab. Flora Micol. Iber. 5: 1-96 -
CASTRO CERCEDA. M.L, J. CHECA & F. PANDO (1997). Bases corológicas de Flora Micológica Ibérica. Adiciones y números 1224-1411. Cuad. Trab. Flora Micol. Iber. 12: 1-192 -
CHECA, J. (2004). Dictyosporic Dothideales. Flora Mycologica Iberica. Vol. 6. 162 pp -
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Brummitt, R.K. & Powell, C.E. (ed.) (1992). Authors of plant names. A list of authors of scientific names of plants, with recommended standard form of their names including abbreviations. Royal Botanic Gardens, Kew. Richmond -
Dorr, L.J. & Nicolson, D.H. (2008). Taxonomic Literature (Supplement VII: F-Frer). Regnum Veg. 149 -
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Contacts

Francisco Pando
originator
position: Researcher
Real Jardín Botánico -CSIC
Claudio Moyano 1
Madrid
28014
Madrid
ES
Telephone: +34914203017
email: pando@rjb.csic.es
homepage: http://www.rjb.csic.es/fmi/FMI-databases.htm

Francisco Pando
metadata author
position: Researcher
Real Jardín Botánico -CSIC
Plaza de Murillo, 2
Madrid
28014
Madrid
ES
Telephone: +34 91 420 30 17
email: pando@rjb.csic.es
homepage: http://www.rjb.csic.es/fmi/FMI-databases.htm

Francisco Pando
point of contact
position: Researcher
Real Jardín Botánico -CSIC
Claudio Moyano 1
Madrid
28014
Madrid
ES
Telephone: +34914203017
email: pando@rjb.csic.es
homepage: http://www.rjb.csic.es/fmi/FMI-databases.htm

Francisco Pando
author
position: Researcher
Real Jardín Botánico -CSIC
Real Jardín Botánico -CSIC; Claudio Moyano 1
Madrid
28014
Madrid
ES
Telephone: 34914203017
email: pando@rjb.csic.es
homepage: http://www.rjb.csic.es/fmi/FMI-databases.htm

Ireneia Melo
content provider
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Jardim Botânico, Museu Nacional de História Natural, Universidade de Lisboa
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PT

Jose Cardoso
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María Teresa Tellería
author
position: Professor
Real Jardín Botanico-CSIC
Claudio Moyano, 1
Madrid
28014
Madrid
ES
Telephone: +34914203017
homepage: http://www.rjb.csic.es/jardinbotanico/jardin/contenido.php?Pag=413&tipo=cientifico&cod=93&len=es

Margarita Dueñas
author
position: Curator
Real Jardín Botánico -CSIC
Claudio Moyano 1
Madrid
28014
Madrid
ES
Telephone: +34914203017
email: mduenas@rjb.csic.es
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Isabel Salcedo
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Universidad del País Vasco / Euskal Herriko Unibertsitatea
Dpto. Biología Vegetal y Ecología (Botánica) Facultad de Ciencia y Tecnología. Apdo. 644
Bilbao
48080
ES
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Sergi Santamaria
content provider
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Universitat Autònoma de Barcelona
Departamento de Biología Animal, de Biología Vegetal y de Ecología Edificio C Facultad de Biociencias
Bellaterra
08193
ES

M.Isabel Castro Cerceda
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Universidade de Vigo
Campus As Lagoas-Marcosende
Vigo
36310
ES

Julia Checa
content provider
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Universidad de Alcalá
Departamento de Ciencias de la Vida (Botánica)
Alcalá de Henares
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Fernando Esteve-Raventós
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Universidad de Alcalá
Departamento de Ciencias de la Vida (Botánica)
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Carlos Illana
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Universidad de Alcalá
Departamento de Ciencias de la Vida (Botánica)
Alcalá de Henares
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ES

María Natividad Blanco
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Universidad de Alcalá
Departamento de Ciencias de la Vida (Botánica)
Alcalá de Henares
28805
ES

Ricardo Galán
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Universidad de Alcalá
Departamento de Ciencias de la Vida (Botánica)
Alcalá de Henares
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ES

Gabriel Moreno
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Universidad de Alcalá
Departamento de Ciencias de la Vida (Botánica)
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ES

Michel Heykoop
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Universidad de Alcalá
Departamento de Ciencias de la Vida (Botánica)
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Teresa Almaraz
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c/ Pasamar, 2
c/ Pasamar, 2
Las Rozas
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Enrique Descals
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IMEDEA (CSIC-UIB)
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Pablo P. Daniëls
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Universidad de Córdoba, Departamento de Botánica, Ecologia y Fisiología Vegetal
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Cordoba
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Carlos Lado
author
position: Researcher
Real Jardín Botánico -CSIC
Claudio Moyano 1
Madrid
28014
Madrid
ES
Telephone: +34914203017
homepage: http://www.rjb.csic.es/fmi/FMI-databases.htm

Francisco Calonge
content provider
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ES
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Luis Alberto Parra
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Javier Rodríquez Pérez
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IMEDEA (CSIC-UIB)
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Jaume Llistosella
content provider
position: University professor
Universitat de Barcelona
Departament de Biologia Vegetal. Universitat de Barcelona. Av. Diagonal, 645
Barcelona
08028
Barcelona

Francisco Pando
administrative point of contact
position: Researcher
Real Jardín Botánico -CSIC
Claudio Moyano 1
Madrid
28014
Madrid
ES
Telephone: +34914203017
email: pando@rjb.csic.es
homepage: http://www.rjb.csic.es/fmi/FMI-databases.htm